Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01109 ATGGCTTCGGCGAACGTGAACGGTGTGGCGCCGTTTCTGAGCAAGACGTACGACATGGTGGATGACTCGTCCACTGACTCGGTTGTTTCGTGGAGCGATAACAGCAACAGCTTCGTCGTCTGGAACGTTCCCGAATTCGCAAGCCGAATCTTGCCCAAATACTTCAAGCACAACAATTTCTCCAGCTTCGTCAGGCAGCTTAACACATACGGCTTTAGAAAAGTTGACCCTGACCGCTGGGAATTTGCAAATGAAGGATTTTTAAAGGGACAAAAGCAACTTTTAAAGAGTATTAGTAGGCGGAAAACTTCTCATGTAAATGGCAGTACTCAGCAACCATCTCAGGTGCAGAACACACCTGTTGGTGGGGCTTGTGTTGAAGTTGGGAAGTTTGGGATTGAGGAAGAGATTGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAGCAGCAAACAACTGATAACCAGTTGCAAACTGTTGGGCAACGAGTTCAGGTAATGGAGCAGCGACAACAACAGATGATGTCATTCCTGGCAAAAGCCATGCATAGTCCTGGCTTCTTGGCTCAATTTGTACAACAGAATGAAAGTAATAGACACATCACTGGAGTAAATAAAAAGAGGAGGCTCCACAGGCAGGATGAAGATAGTTTAGCCAACAAGCATCTCCATAATTCTCTTGATGGTCGTGTTGTCAAGTATCAGCCTTCTATAAATGAGGCAGCAAAATCATTGTTATGCCAGATTTTGCAAATGAACAACTCTACGAGGATGGACTCATCAATTAAGAGCCCGGATGCATTCCTTATTGACGATGTTCCTACTGCCATTCCTTTAGATAGCAGTAGTTCATCCACTCGAGTATCTGGTGTTACCCTTTCCGAGGTTCCACATCCACAAACTTCTGGACAGTCATATGTGCCTATAGAACCACAATTTCCCGGCAGTCGAATGACCAGTAGCAGATCTGAGGTTCAATCTTCACCAGCAGTGTTTCCTGACTGTGTCAAAGCAGCTGAATTTCCAGAATTAAATGCTCAGAAATGCCAAGACAGTGTTTTAGATTTTGGTAAAGTCCAAGGGATTGGAACTGAAAGCAGCTTCATGAATCCTGATCTCAGTTTTGTGGGGTCTGACACTGCCAATATGGAGGATCTAGAAATGATCTCGACTGTTTTGGATGGAACAGAGTCTATTGAAGCTAATGCTTTTTCACCTGATGCAGATGGAGTTTCTAAGCTTCCTGGAATTGGTGATGAATTCTGGGAACTGTTTTTAAGGCCAAGTCCTCTCACTGGAGATACAGATGAAGTGAAGTGTAACTCTTTGGGATGTGATTTTACTGGTGACCAGGAATTGTCATCAGAAAAGGAGATTCAACAGGAAAATGCTGCTGATAAAAAACAGCATATGGACCATCTTACCCAACAGATGGGTCTTCTTGCTTCAAAGTCTTAA 1482 0.4352 MASANVNGVAPFLSKTYDMVDDSSTDSVVSWSDNSNSFVVWNVPEFASRILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLKGQKQLLKSISRRKTSHVNGSTQQPSQVQNTPVGGACVEVGKFGIEEEIERLKRDKNVLMQELVRLRQQQQTTDNQLQTVGQRVQVMEQRQQQMMSFLAKAMHSPGFLAQFVQQNESNRHITGVNKKRRLHRQDEDSLANKHLHNSLDGRVVKYQPSINEAAKSLLCQILQMNNSTRMDSSIKSPDAFLIDDVPTAIPLDSSSSSTRVSGVTLSEVPHPQTSGQSYVPIEPQFPGSRMTSSRSEVQSSPAVFPDCVKAAEFPELNAQKCQDSVLDFGKVQGIGTESSFMNPDLSFVGSDTANMEDLEMISTVLDGTESIEANAFSPDADGVSKLPGIGDEFWELFLRPSPLTGDTDEVKCNSLGCDFTGDQELSSEKEIQQENAADKKQHMDHLTQQMGLLASKS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01109 493 FunFam Heat shock transcription factor 1 5 102 - -
Arst3g01109 493 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g01109 493 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g01109 493 Gene3D - 4 103 IPR036388 -
Arst3g01109 493 Coils Coil 130 157 - -
Arst3g01109 493 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g01109 493 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g01109 493 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g01109 493 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 299 IPR027725 -
Arst3g01109 493 MobiDBLite consensus disorder prediction 459 478 - -
Arst3g01109 493 SUPERFAMILY "Winged helix" DNA-binding domain 8 101 IPR036390 -
Arst3g01109 493 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01109 Arst-Chr3 8524177 8527347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01109 6 493 HSF AT5G16820 51.703 5.05e-150 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst3g01109 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01109 K09419 - qsa:O6P43_001765 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01109 3 8524177 8527347 Arst3g01109 3 8524177 8527347 ECH
Arst3g01109 3 8524177 8527347 Arst9g03245 9 109939058 109940792 PCT