Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01087 ATGGGAATGCGACCCCGTAAATCGGGTGAGGAGGGACAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGCTGCCAGGCTGTGGAACCACGGGTTCAGGACAATCGGGGTCGACTAGTAAGAGTGCTGGGTTGGCAACGCCAGCTGGTGATAGCACCTGTCTCAAATTAGACCATCTTGACATACAAGGCGATGATGCTGGATCGCAGGGGCCAGTTGGTAGCAAGAAGAAAAAGAGAGGTCAACGGGCAGTTGGACCTGATAAAAGTGGAAGAGGGCTCCGTCAATTTAGTATGAAAGTTTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAGGCAACAGTGATTTGTCTCCTGATCAGCAACAATATTATGAGAAAAATATCCGTAGAAGGGTCTATGATGCTCTGAACGTTCTCATGGCAATGGATATTATTTCAAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTGTGAACGATATTGAAGAACTAAAGTCAGAACGTCTTGTGCTCAGGAGTAAAATTGAGAAGAAAACAGCATATTTGCATGAGCTGGAGGAGCAAGTAATCTCTCTCTCTCTCTCTCAAAATGAGCAATTATATAGCTCAGAAAACCCTCCCAGTGGTGTATCTTTACCTTTTATTCTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGATGACAACTATGTGCTAAAGGCAATGAAGTTCTGTGGGAGACCACAGAGTGATAATACGACACACAATCTTGCCGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGAATCAGTCACAAGTTCCTCCTTCAGTTACGAATCTTCCAGCTAGGCCTCCCACATCACCTCCACTCCCTGGGATATTGAAGGCAAGAGTTAAGAATGAGCCTTAA 1014 0.4497 MGMRPRKSGEEGQEEEEEEEEEELPGCGTTGSGQSGSTSKSAGLATPAGDSTCLKLDHLDIQGDDAGSQGPVGSKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSDLSPDQQQYYEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKSERLVLRSKIEKKTAYLHELEEQVISLSLSQNEQLYSSENPPSGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCGRPQSDNTTHNLADGGEGSSMSGLNQSQVPPSVTNLPARPPTSPPLPGILKARVKNEP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01087 337 MobiDBLite consensus disorder prediction 28 46 - -
Arst3g01087 337 Gene3D - 84 176 IPR036388 -
Arst3g01087 337 MobiDBLite consensus disorder prediction 286 312 - -
Arst3g01087 337 Gene3D Transcription factor DP 177 294 IPR038168 -
Arst3g01087 337 SMART DP_2 178 335 IPR014889 -
Arst3g01087 337 MobiDBLite consensus disorder prediction 286 337 - -
Arst3g01087 337 FunFam Transcription factor-like protein DPB 177 298 - -
Arst3g01087 337 SUPERFAMILY "Winged helix" DNA-binding domain 91 172 IPR036390 -
Arst3g01087 337 CDD DP_DD 176 276 IPR014889 -
Arst3g01087 337 FunFam Transcription factor-like protein DPB 83 176 - -
Arst3g01087 337 PANTHER TRANSCRIPTION FACTOR DP 32 290 IPR015648 GO:0005667|GO:0051726
Arst3g01087 337 Pfam Transcription factor DP 179 289 IPR014889 -
Arst3g01087 337 PIRSF Txn_factor_DP 6 337 IPR015648 GO:0005667|GO:0051726
Arst3g01087 337 Pfam E2F/DP family winged-helix DNA-binding domain 91 171 IPR003316 GO:0005667|GO:0006355
Arst3g01087 337 SUPERFAMILY E2F-DP heterodimerization region 178 289 IPR037241 -
Arst3g01087 337 MobiDBLite consensus disorder prediction 1 94 - -
Arst3g01087 337 SMART E2F_TDP_2 88 171 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01087 Arst-Chr3 8318358 8321912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01087 72 277 E2F-DP Transcription Factor Family AT5G02470 54.762 2.47e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst3g01087 DP 5.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01087 K04683 - jre:108988357 486.878