Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01073 ATGGAAGATGGAAAGCATAAATCAAGGAGAGAAGATTCCGAAGTGAAGGAAGATGATTCCAAGAGGAGCCACCGTGACAGGGGCGGGGAAAAGGACAAGGATAGAAGCAATGGGAAGCATAGGGATAGGGAGAAGAGGGACCGTGACCGGGATAGCAGAAGGCATGATAGAGATCATAGTAGTGATGAGTCTGATGATAGGTATGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAAGGAGAAGGAGAAGGAGAAGCGCAGAGATAAAGACAAGGAAGAAAGAAGAGCTCGCGAGAAGAAAAGAGAAAGGGAAAGGGAAAGGGAAAAGGAAAGGGAAAAGGAAAGGGAGAGGGAAGAAAAGGAGAGGGAAAGGAGAGAAAGGGCGAGGATGCCAAGGTGAAGGAGAGAAAACCTACTCATGAAGAGGAGATAGAGGAAGAACACAAGAGATTGGATGAAGAAATGGAAAAGAGGAGGAGAAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAGCAGGGTGAAGCAAGTGCTAGTGAACCAAAGTTGGGAAAGGCCTGGACCCTTGAAGGGGAATCTGACGATGAAGAAGCAACTGGTACAGGGAAGCCAGATACTGCGATGGATGTAGATGAAGATGAAAAACCTGTTGATAAAGAACCTGGGGATCCTATGGTGGCAGATGGTGATAATGGGGCAGTTACGTCTGATTTACAAGATGGAACTGCTGGTGCTCCTGAGGATGAGGAAATTGATCCATTGGATGCCTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAACACTGTTTGCTCTTCAATACCTGATAAAACTAATGACAAGAAACTCAAGGATAGAGGGGATGAGCAGGGTCGTAGTGGACAGGCAAGGAAAGTTTCCAATAATAAATCGATTGGAAGAATAATTCCTGGTGAAGACTCTGACTCTGATTATTCAGATCTTCAAGTTGACGATGACGACATTGAAGAAAATGATGAGGAGTTTATGAAAAGAGTGAAGAAGTCAAAAGCTGATAAGCTGTCTATAGTTGACCATTCAAAGATTGATTATCAACCTTTCAAGAAAAATTTCTACATTGAAGTGAAGGATGTCTCGAGGATGACTCCTGAAGAAGTTGCTGCATACCGGAAGGAGCTGGAGTTGAAGATACATGGAAAGGATGTTCCAAAGCCAGTAAAATCATGGCATCAGACTGGACTTACTAGCAAAATTTTAGAGACAATAAGAAAGCTTAACTATGAAAAGCCGATGCCTATTCAAGCCCAGGCACTGCCTGTAATAATGAGTGGTCGAGACTGCATTGGTATTGCTAAAACTGGATCAGGCAAAACACTTGCTTTTGTTTTGCCTATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTACTGGAGATGGACCAATTGGGCTTATCATGGCTCCTACAAGGGAGCTTGTTCAACAGATTTACAGTGATATAAAGAAGTTTGGGAAGGTACTGGGTCTAAGATGTGTACCTGTGTATGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAGCGTGGAGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGTACCAGTGGTGGCAAAATAACTAACCTGCGCAGGGTTACTTATTTGGTCATGGATGAGGCTGATAGAATGTTTGACATGGGGTTTGAACCCCAAATCACAAGAATTGTTCAGAATATCCGACCAGATCGTCAAACTGTTCTATTTTCTGCCACTTTCCCCCGCCAGGTTGAAATTCTCGCCCGCAAGGTTCTAAATAAACCTGTTGAAATACAAGTTGGTGGCAGAAGTGTTGTGAACAAGGACATAACACAGCTGGTGGAGTTGAGACCAGAAAAAGAAAGATTTCATAGGCTATTAGAGATATTGGGTGAATGGTATGAGAAAGGAAAGATTTTGATTTTTGTCCAGTCACAGGAAAAATGTGATGCTTTGTTCAAGGATTTGCTAAAGTCTGGTTATCCTTGCTTATCTCTTCATGGAGCTAAGGACCAGACAGATCGTGAATCCACAATTGCTGATTTCAAAAGCAATGTCTGCAACATGTTGATTGCAACTAGTATTGCTGCCAGGGGACTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCTAATCACTATGAAGATTATGTTCATCGTGTTGGCCGCACTGGCAGAGCAGGCCGAAAGGGTTGCGCTATTACTTTTATTTCAGAGGAAGAAGCAAGATATGCACCTGATTTGGCAAAAGCATTGGAGCTATCTGAGCAAGTTGTTCCTGATGACCTGAAGGCACTTGCTGATGGCTTTATGGCAAAAGTGAAACAAGGGCTTGAGCAGGCTCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGAGAGGAGAGCAGCGAAGAAAGCTCAAGCCAAGGGATATGGGTTTGAAGAGGATAAATCAGATTCGGAAGATGAAGATGAAAATATTAGGAAGTCGGGAGGTGACATCTCACAGCTTGCTCATATTCTTGCTGCCTCAAAAGGCACTGTCCCTGCTATACCTAGCCCCATCTCTCCTGCTCAGCTGATTTCTAATGGTGGACTAACTGTTCCGTTGCCAGCTGTTCTTGGTAATCTCCAAACTACTACAGTTTTGCCTACAGGGCTTCCCCTTACTACAAATGATGGGGCAGCTCGGGCAGCATTAGCTGCTATTAACCTGCAGCACAACTTAGCTAAGATACAGTCTGAAGCATTGCCTGAGCATTATGAAGCTGAACTAGAGATAAATGATTTCCCCCAAAGTGCTCGGTGGAAAGTCACACACAAGGAAACTTTGGGTCCAATTTCTGAGTGGACAGGAGCCGCTATTACCACCAGGGGACAATATTTCCCACCTGGTAAAATCGCGGGACCTGGGGAACGCAAGCTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCTGTTAAGAGAGCTAAAGCAGAGTTGAAGCGTGTTTTGGAAGACATCACAAATCAAGCTTTACAACTTCCTGGTGGATCTCAACCTGGCAAATACTCTGTTGTTTAA 3140 0.4404 MEDGKHKSRREDSEVKEDDSKRSHRDRGGEKDKDRSNGKHRDREKRDRDRDSRRHDRDHSSDESDDRYEREREREREREKEKEKEKRRDKDKEERRAREKKREREREREKEREKEREREEKERERRERAKEKERERERERERERREDRERGREREREREKDKDRREREREKEIERERGRRVRDREKRREVDSDYSDDDSRERERDRKRHKKEDDDYKGRDKERSSGKSHKHTEDIEGSPRRKSVEDDSDAKVKERKPTHEEEIEEEHKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASASEPKLGKAWTLEGESDDEEATGTGKPDTAMDVDEDEKPVDKEPGDPMVADGDNGAVTSDLQDGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNTVCSSIPDKTNDKKLKDRGDEQGRSGQARKVSNNKSIGRIIPGEDSDSDYSDLQVDDDDIEENDEEFMKRVKKSKADKLSIVDHSKIDYQPFKKNFYIEVKDVSRMTPEEVAAYRKELELKIHGKDVPKPVKSWHQTGLTSKILETIRKLNYEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVTGDGPIGLIMAPTRELVQQIYSDIKKFGKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVELRPEKERFHRLLEILGEWYEKGKILIFVQSQEKCDALFKDLLKSGYPCLSLHGAKDQTDRESTIADFKSNVCNMLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLAKALELSEQVVPDDLKALADGFMAKVKQGLEQAHGTGYGGSGFKFNEEEDEERRAAKKAQAKGYGFEEDKSDSEDEDENIRKSGGDISQLAHILAASKGTVPAIPSPISPAQLISNGGLTVPLPAVLGNLQTTTVLPTGLPLTTNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQSARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIAGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGSQPGKYSVV 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01073 1164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 749 910 IPR001650 -
Arst3g01073 1164 CDD DEADc_DDX46 518 739 - -
Arst3g01073 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 910 IPR027417 -
Arst3g01073 1164 Coils Coil 256 304 - -
Arst3g01073 1164 CDD KH-I_AtRH42_like 1062 1163 - -
Arst3g01073 1164 SMART helicmild6 790 871 IPR001650 -
Arst3g01073 1164 FunFam probable ATP-dependent RNA helicase DDX17 491 741 - -
Arst3g01073 1164 Gene3D - 481 738 IPR027417 -
Arst3g01073 1164 MobiDBLite consensus disorder prediction 1 304 - -
Arst3g01073 1164 MobiDBLite consensus disorder prediction 313 351 - -
Arst3g01073 1164 Gene3D - 739 913 IPR027417 -
Arst3g01073 1164 Coils Coil 65 149 - -
Arst3g01073 1164 Pfam Helicase conserved C-terminal domain 763 871 IPR001650 -
Arst3g01073 1164 SMART ultradead3 548 753 IPR014001 -
Arst3g01073 1164 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 684 692 IPR000629 -
Arst3g01073 1164 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 529 557 IPR014014 GO:0003724
Arst3g01073 1164 Coils Coil 1128 1151 - -
Arst3g01073 1164 MobiDBLite consensus disorder prediction 935 972 - -
Arst3g01073 1164 MobiDBLite consensus disorder prediction 1 376 - -
Arst3g01073 1164 MobiDBLite consensus disorder prediction 396 451 - -
Arst3g01073 1164 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 560 738 IPR014001 -
Arst3g01073 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 887 IPR027417 -
Arst3g01073 1164 MobiDBLite consensus disorder prediction 928 972 - -
Arst3g01073 1164 Pfam DEAD/DEAH box helicase 554 725 IPR011545 GO:0003676|GO:0005524
Arst3g01073 1164 MobiDBLite consensus disorder prediction 406 422 - -
Arst3g01073 1164 PANTHER RNA HELICASE 473 943 - -
Arst3g01073 1164 CDD SF2_C_DEAD 750 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01073 Arst-Chr3 8142131 8147979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01073 530 886 Eukaryotic Initiation Factors Gene Family AT3G13920 35.833 2.73e-55 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01073 K12811 - gmx:100784306 1502.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01073 3 8142131 8147979 Arst3g01073 3 8142131 8147979 ECH