Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00954 ATGGATGGTACAGCTGCAAGAAAGTCTCAAAAGGCTGACCGAGAAAAAATAAGGAGGGATCGACTCAATGAACAATTTGTAGAACTTGGCAGCATTTTGGACCCTGATAGGCCTAAAAATGACAAAGCAACCATTCTTGGTGATACAATTCAATTGCTGAAGGATCTTACTTCTCAAGTTGGTAAACTCAAAGATGAATATGCTGCACTAAATGAAGAATCTCGTGAATTGGCTCAAGAGAAAAACGATCTCAGGGAAGAGAAGGCTTCTCTTAAAACAGATATTGAAAACTTGAATAATCAGTATCAGCAGCGACTGAGGAACATGTTTCCTTGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATACCCATACCCAATGCCAATGGCTGTCCCTCCGGGTTCAATTCCCTTGCAACCATACCCATTCTTTGCTAATCAAAATCCGTCTGTCATCCCTAACCCCTGTTCAACATTTGTTCCTTATTTAGCACCAAATACCCTTGTTGAACAACAATCTGCCCAGTATGTATCTCCACCGTCTCATCCAGGTACTCGGTCCCATTTGTCAAGTAAACATGACACCAGAAACAAACCACCCAGGGATAGGGAGAGCAAAGCAGAAAAAAGTGAGGCTTCAAATGATGTCACCACAAACCTTGAGTTGAAGACTCCTGGATCTTCTGCAGATCAGGTTAGCGTTGTTTTCTCAATATGGTAA 729 0.4211 MDGTAARKSQKADREKIRRDRLNEQFVELGSILDPDRPKNDKATILGDTIQLLKDLTSQVGKLKDEYAALNEESRELAQEKNDLREEKASLKTDIENLNNQYQQRLRNMFPWTAMDHSVMMAPPSYPYPMPMAVPPGSIPLQPYPFFANQNPSVIPNPCSTFVPYLAPNTLVEQQSAQYVSPPSHPGTRSHLSSKHDTRNKPPRDRESKAEKSEASNDVTTNLELKTPGSSADQVSVVFSIW 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00954 242 Coils Coil 5 25 - -
Arst3g00954 242 SMART finulus 12 62 IPR011598 GO:0046983
Arst3g00954 242 MobiDBLite consensus disorder prediction 175 231 - -
Arst3g00954 242 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Arst3g00954 242 PANTHER TRANSCRIPTION FACTOR BHLH121 2 235 IPR044579 GO:0003700|GO:0006879
Arst3g00954 242 MobiDBLite consensus disorder prediction 190 214 - -
Arst3g00954 242 Coils Coil 53 108 - -
Arst3g00954 242 CDD bHLH_AtILR3_like 11 85 - -
Arst3g00954 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Arst3g00954 242 Gene3D - 5 88 IPR036638 GO:0046983
Arst3g00954 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 75 IPR036638 GO:0046983
Arst3g00954 242 MobiDBLite consensus disorder prediction 175 189 - -
Arst3g00954 242 MobiDBLite consensus disorder prediction 215 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00954 Arst-Chr3 6941511 7040239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00954 4 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 65.417 5.05e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst3g00954 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00954 - - adu:107477252 469.544