LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g00922	ATGAACAACAACTACACATATGAAACGGAAGATGAAGAAGACGAAGACGAAGAATCAGTGGAAGACGAAGAAGACGATGAATCACTGGAAGATGAAGAAGAAGAATCTCTGGAAGACGAAGAAGACGATGAATCACTGGAAGACGACGAAGACGATGAATCACTGGAAGATGAAGAAGAAGAACCTCTCGAAGAGGAAGAAGACGATGAATCTCTGGAAGACGAAGAAGACGATGAATCACTGGAAGATGAAAAAGAAGAATCTCTGGAAGACGAAGAAGACGATGAATCACTGGAAGATGAAGAAGAAGAATCTCTAGAAGAATGCACCACATCACGAAAGAGAAGCCGCTTCACTACTTTGACCAAGTCAAACATCAAGAAGCTCCAAAAAACTAAAATCAATGAGGTATCATCTAATCTTTCGATAACAAAATCCGAGGCGTGCCTTTTGCTAATCCACCATGGTTGGAGCGCCACGAAGGTCGACGAGGCCTGGTTCGACGACAAAGAAAGAGTTCGGAAACTTGTTGGATTGCTCAAACACAACACCGGAGAGATCGTAACAACCCAAACTTGTGAGATATGTTTTGATAATACGGTTTGCTTGGAGAAGAAGTTGAAATCCGCCAAGTGTGGCCACGCATACTGCGTCGATTGTTGGAAGCTCTACATCAATGAGAAGATCAAAGAAGGTCCTCATGAGTGCCTCAAACCCATGAGATGCCCTCATCCATCTTGTGAGGCTTCTTTGGAGATTAACATGATTCGGCGATTCGCTAGCCAGCAAAACAGGAAGATGTACGATCGTTTCTTGTTACGATCTTATGTCGAAACAAGAAAGAATATAAAGTGGTGTCCAAGGCCTGATTGCGATCTTGCTGTTAGGTACAAATCAGATGGAAATTATGTTAACAAATATGTTGAAGTAAGTTGCAGGAATGGGCATAGGTTTTGCTGGGGATGCGGCGAAGATGCTCATAGACCCGTGAGTTGTGAAATGATGGCTAAGAAGAACCAAGAAAGTGGTGATTCTAAGAGCTTGCGTTGGATCTCTACTTTCACCAAGAAATGCCCTAGTTGTAAGCAACCCATTGAGAGGAACGGGGGTTGCATGCACGTAACATGCACTGTTTGCAGCTACCAATTTTGCTGGCTATGTCTTTCTGATTGGTTTCTGTGTTCCGCCCGTTGCAACCGTTTCTAG	1206	0.4353	MNNNYTYETEDEEDEDEESVEDEEDDESLEDEEEESLEDEEDDESLEDDEDDESLEDEEEEPLEEEEDDESLEDEEDDESLEDEKEESLEDEEDDESLEDEEEESLEECTTSRKRSRFTTLTKSNIKKLQKTKINEVSSNLSITKSEACLLLIHHGWSATKVDEAWFDDKERVRKLVGLLKHNTGEIVTTQTCEICFDNTVCLEKKLKSAKCGHAYCVDCWKLYINEKIKEGPHECLKPMRCPHPSCEASLEINMIRRFASQQNRKMYDRFLLRSYVETRKNIKWCPRPDCDLAVRYKSDGNYVNKYVEVSCRNGHRFCWGCGEDAHRPVSCEMMAKKNQESGDSKSLRWISTFTKKCPSCKQPIERNGGCMHVTCTVCSYQFCWLCLSDWFLCSARCNRF	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g00922	401	SMART	ibrneu5	340	394	IPR002867	GO:0008270
	Arst3g00922	401	SMART	ibrneu5	266	332	IPR002867	GO:0008270
	Arst3g00922	401	Coils	Coil	72	101	-	-
	Arst3g00922	401	MobiDBLite	consensus disorder prediction	7	106	-	-
	Arst3g00922	401	MobiDBLite	consensus disorder prediction	1	113	-	-
	Arst3g00922	401	Coils	Coil	20	49	-	-
	Arst3g00922	401	Gene3D	-	328	401	-	-
	Arst3g00922	401	ProSiteProfiles	Zinc finger RING-type profile.	193	243	IPR001841	-
	Arst3g00922	401	SUPERFAMILY	RING/U-box	190	275	-	-
	Arst3g00922	401	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	188	280	IPR013083	-
	Arst3g00922	401	ProSiteProfiles	TRIAD supradomain profile.	189	401	IPR044066	-
	Arst3g00922	401	Pfam	IBR domain, a half RING-finger domain	267	332	IPR002867	GO:0008270
	Arst3g00922	401	Pfam	IBR domain, a half RING-finger domain	347	391	IPR002867	GO:0008270
	Arst3g00922	401	SUPERFAMILY	RING/U-box	350	394	-	-
	Arst3g00922	401	FunFam	RBR-type E3 ubiquitin transferase	188	282	-	-
	Arst3g00922	401	CDD	BRcat_RBR_ANKIB1	273	337	-	-
	Arst3g00922	401	SUPERFAMILY	RING/U-box	268	338	-	-
	Arst3g00922	401	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	46	391	IPR031127	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g00922	Arst-Chr3	6727246	6728451	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g00922	116	391	ARIADNE family	AT1G05890	43.463	1.31e-76	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g00922	K11968		-	aip:110269356	626.706