LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g00921	ATGGACACCTCAAATGAAATGGAACCTTTTCTGTTTCAAAACGAATCTCCTCATCATGAAGTAGAAGAGGAGGATGAGTACTCCATTATTGCTGCAGCAGAGATCAAAGAATCACCACCACCATCATCATCATCATCATCATCCACACCACAAAGCAGCTGCTTCACTACTTTGACCGACTCCGATATCAGGAAGCTCCAAACCACTGAAATCAACAAGGTATCATCTGTTCTTCTCATACCACAATCCGATGCGTGCCTTTTGCTTATCCACCATGGCTGGAGCGCCATGAAGGTCCACGAAGCTTGGTTCGAAGACGAGAAAAGCGTTCGAGAACTCGTTGGCTTGCTCGATAGTAGTAACAACATCATCCAGAGTTCTACATGCGAGATCTGCTTTGATGATTCAGTTTGGTACAAGAAGGTGGAGTATGCCAAGTGTGGCCATGGATACTGCATCGATTGTTGGAAGCACTACATCGATGAGAAGATCCAAGAAGGTTCTCATGAGTGCCTGAAACCGATGCGATGCCCTCATCCATCTTGTGAGGCTTCCTTGGAGATTGAAACTGTTCGGCGATTCGCCAGCGAGACAAACAAGAACATGTACGATCGTTTCTTGTTACGCTCGTATGTCGAAACCAGAAAGAATATAAAGTGGTGTCCAAGTCCTGCTTGCGATCTTGCTGTTCTTTACGAATCGGATGGAAATTACGCTAACAAATATGTTGAAGCTTGTTGCAGTAATGAACATAGGTTTTGCTGGGAATGTGGTGAAGATGGTCATAGACCTGTGAGTTGTGAAACGGTGGCTGAGTGGATGAAGAAGAATGTGGATGATTCTCAGAGCGTGATTTGGATCTCTGCTTTCACGAAGGAATGCCCCGATTGTGGGATTCGCATTGAGAAGAATGAGGGTTGCATGCAGATGATTTGCACTGTTTGTGGCTGCCGATTTTGCTGGCTATGTCTTTCTAAGTGGTCTCTGTGTTCCGCTTACGGTTGTAACCGTTTCTCAGCCCGGAATATTGAGACGCCCACAATGAACAATGGAAATGGCTATTTGGACTTGGAGAGGTACACTCACTATTATGAACGTTGGTTTACCAACGAATTCTCAAGGAAAAAATCGATTGAGATGATGGAGAAGTACCTGAACAATGAGAATATAAGAATCCTGTGCAAGGAATTTGAAAGGCGTGAAGATGATTTTGAGTTTGTGAAGAAGGCTTGGGAAGAGGTAATCGAGTGTAGGAAGTTGCTGAAGTGGACCTATGCATATGGTTACTTCATCCCTGAGGAGGAGAAAGCCAAGAAGGAGTTGTTCGAACACACGCAAGGCGTTGCTGAGAATGCATTGGAGAAGCTTCACAAGTTTGCCGAAACAATGCTGATGGAGATCCTGAATAAGAAGAAAGACGGTTTCGATAGGAATCGTCTGGAACTTTCTCATCTGACCGTTGTCACCAAGAATTTCTTTGATAATATGGTGACACAATTGGAGGATAGAGGGCTTGATGATGTGAATGTGAAGAGTTATGGTGAAAGCTCAAGCTCCTCCTCACTGTCTTCGTCGCCTCGAGGTGTGGTGAGGGATGGGATGACAGAGATTGGTCTCCGGAAATGCGGTTATTGCGGTTACTACAACCTTGCCAGCACTCTAGAGTGTCCCTGCATTGAGAAGAAATACAAATACCAGTGCTGGATCTGTTCTCGTGATCCTCGTGTCATTTGGTGTCCATTGCGTATGGTTAATTAA	1758	0.4482	MDTSNEMEPFLFQNESPHHEVEEEDEYSIIAAAEIKESPPPSSSSSSSTPQSSCFTTLTDSDIRKLQTTEINKVSSVLLIPQSDACLLLIHHGWSAMKVHEAWFEDEKSVRELVGLLDSSNNIIQSSTCEICFDDSVWYKKVEYAKCGHGYCIDCWKHYIDEKIQEGSHECLKPMRCPHPSCEASLEIETVRRFASETNKNMYDRFLLRSYVETRKNIKWCPSPACDLAVLYESDGNYANKYVEACCSNEHRFCWECGEDGHRPVSCETVAEWMKKNVDDSQSVIWISAFTKECPDCGIRIEKNEGCMQMICTVCGCRFCWLCLSKWSLCSAYGCNRFSARNIETPTMNNGNGYLDLERYTHYYERWFTNEFSRKKSIEMMEKYLNNENIRILCKEFERREDDFEFVKKAWEEVIECRKLLKWTYAYGYFIPEEEKAKKELFEHTQGVAENALEKLHKFAETMLMEILNKKKDGFDRNRLELSHLTVVTKNFFDNMVTQLEDRGLDDVNVKSYGESSSSSSLSSSPRGVVRDGMTEIGLRKCGYCGYYNLASTLECPCIEKKYKYQCWICSRDPRVIWCPLRMVN	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g00921	585	SUPERFAMILY	RING/U-box	203	274	-	-
	Arst3g00921	585	ProSiteProfiles	Zinc finger CCHC-type profile.	254	267	IPR001878	GO:0003676\|GO:0008270
	Arst3g00921	585	Pfam	IBR domain, a half RING-finger domain	202	267	IPR002867	GO:0008270
	Arst3g00921	585	Pfam	IBR domain, a half RING-finger domain	284	327	IPR002867	GO:0008270
	Arst3g00921	585	SMART	ibrneu5	201	267	IPR002867	GO:0008270
	Arst3g00921	585	SMART	ibrneu5	271	330	IPR002867	GO:0008270
	Arst3g00921	585	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	52	424	IPR031127	GO:0004842\|GO:0016567
	Arst3g00921	585	FunFam	RBR-type E3 ubiquitin transferase	124	215	-	-
	Arst3g00921	585	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	124	215	IPR013083	-
	Arst3g00921	585	SUPERFAMILY	RING/U-box	127	214	-	-
	Arst3g00921	585	MobiDBLite	consensus disorder prediction	13	31	-	-
	Arst3g00921	585	MobiDBLite	consensus disorder prediction	1	56	-	-
	Arst3g00921	585	Gene3D	-	263	506	-	-
	Arst3g00921	585	MobiDBLite	consensus disorder prediction	38	56	-	-
	Arst3g00921	585	SUPERFAMILY	RING/U-box	279	337	-	-
	Arst3g00921	585	ProSiteProfiles	TRIAD supradomain profile.	125	339	IPR044066	-
	Arst3g00921	585	CDD	BRcat_RBR_ANKIB1	208	276	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g00921	Arst-Chr3	6713798	6720276	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g00921	55	556	ARIADNE family	AT1G65430	39.464	1.25e-119	364

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g00921	K11968		-	aip:107632220	1138.64