Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00893 ATGGCCAAGACTAGCAAGAAATCAGCTTCCAAGGTTGAGACTGCTCCACCTGTCAAAAAGGGAAAGAGGCAGGCAGATGAGGAACTTGAGAAGAAAGTTAGTTTAAAGAAACAGAAGATAGAAGAGGCTGCTCAGAAGCAAAAGAAGGAAGTGAAGGTGCAGAAGAAAAAGGAGGAAAGTAGTTCAGATGATTCTTCTTCAGATTCTGAAGATGAGAAACCTGCTACCAAAGTTGCTGTTGCTTCAAAGAAGCAGCCTGCTAAGAACGGCACTTTAAGCTCCCCTGCAAAGAAAGCCAAGCCAGCTAGTAGTTCTAGCTCTGATGATTCTGCTTCAGAGTCTGAAGATGAGAAACCTGCAGCAAAGGCTCCTCCAAAAAGTCAGGCTGCAAAAAATGTTGCTCCAGCAAAGAAAGTCAAGCCAGCTTCCTCTTCAAGTTCTGAATCCTCAGATGATGACTCTGATGACGACGAAGTGCCCAAATCCAAGGTGCTGCCTGCTGTGGTTAAGAATGGATCTGCTTCTGCAAAGAAACCAAGTGAAAGCTCCGAGTCTGAGGACAGCAGCTCTGGGGAGGAAAATAAAGCAAAATCAAGCAAAAAGGTGCCTGCTAAGAAGGTTGAATCAGAGTCATCCTCTGATAGTAGCTCTGATGAAGAAGATGAGAAAAAACCAGTAGCCAAATCATCTGCAGTTCCAAGTAAGAAAGTTGAGACAACTGAAACTTCAGATGATGATTCAAGTGAAAGCTCTGATGATGAAGAAAATGGTGCAAAACCTACTGCAAATGCGGCTTCCAAGCCTTCTGCTATAGCTAAGAAGAACGATGACAGTGACAGTTCAGATTCTGATGATAGCAGCTCCGAAGATGAGAAGAAAACTGCTCCCAAGACTGTTTCCAATGCCAAGTCAGTACCCGTGCCAAAGCCTGCCAAGAAGTCTAGTAATTCTAGTGAGAGTGAGTCGGATGAGGAAGAGGACTCATCTGATAGTGAATCTGAAGATGAAAAGAAAACTGCTAAAAGCTCCGGTCAGGGAAAAATGGATGTTGATGAAGAAGAGAGCTCTGATGAAAGTGATGACGAGCCAAAAAAGAAGCCTGTGAAAGTTTCAAAAGAAAGCAGTGATAGTTCAGATGACAGTGATGAGGAAGAAGAGAAACCTTCTAAAACTCCTCAGAAAAGTGCCAAGGATGTGGAGATGGTTGATGCTGACTCAGCAAAGAAAGTTCCTAAAACCCCTTCTACACCTAGTGCTGCAACAGGTGGTACAAAGACACTATTTGTTGGAAACCTGTCATTTAATGTGCAACGATCTGACGTTGAGGAGTTTTTCAAAGATTGTGGAGAAGTTGTTGATGTTCGTTTTTCTGTTGACGATACTGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCTACTGCAGAGGCAGCACAAAGTGCTCTTGAATTGAATGAGCATGAGTTGTTGAATCGTCCTGTTAGGCTTGATTTAGCTCGTGAAAGAGGTGCATATACCCCTGGTGGCAGCAATTCCTTCCAGAAAGGTGGTCAGCGTCAATCTGGTCAAACTATATACATAAGGGGTTTTGATAAATCTCTTGGAGAAGAAGAGATAAGAGCTAGCCTAAATGAGCATTTTGGTTCGTGCGGGGAGATCTCGAGGGTGTCAATCCCAAAAGATTTTGAGTCTGGATGTCCTAAAGGTTTTGCCTACATGGACTTCAAGGATTCTTCTAGCATGAAGAAAGCTCTAGAACTCAATGAGACTGAACTTGCTGGTGGTTATTACCTCTCAGTTGAAGAAGCCAAACCTAGATCTGATGGCTTTGGTTCAGGTGGAAGAGGTGGCGGTCGATTTGGAGGTAGGAGTAATGAAGGTGGTCGATTTGGAGGAAGGAGTGGTGGTGGCCGATTTGGTGGTGGAAGGGGTGGTAGTGATCGAGGCAGAGGTGGTCGAGGAAGAGGTGGTGGAAGGGGTTTTGGAAATAAACCGACATTTGCTGCAGAAGGAAAAAAGACCACATTTGCCGATGACGACTAG 2043 0.443 MAKTSKKSASKVETAPPVKKGKRQADEELEKKVSLKKQKIEEAAQKQKKEVKVQKKKEESSSDDSSSDSEDEKPATKVAVASKKQPAKNGTLSSPAKKAKPASSSSSDDSASESEDEKPAAKAPPKSQAAKNVAPAKKVKPASSSSSESSDDDSDDDEVPKSKVLPAVVKNGSASAKKPSESSESEDSSSGEENKAKSSKKVPAKKVESESSSDSSSDEEDEKKPVAKSSAVPSKKVETTETSDDDSSESSDDEENGAKPTANAASKPSAIAKKNDDSDSSDSDDSSSEDEKKTAPKTVSNAKSVPVPKPAKKSSNSSESESDEEEDSSDSESEDEKKTAKSSGQGKMDVDEEESSDESDDEPKKKPVKVSKESSDSSDDSDEEEEKPSKTPQKSAKDVEMVDADSAKKVPKTPSTPSAATGGTKTLFVGNLSFNVQRSDVEEFFKDCGEVVDVRFSVDDTGRFKGFGHVEFATAEAAQSALELNEHELLNRPVRLDLARERGAYTPGGSNSFQKGGQRQSGQTIYIRGFDKSLGEEEIRASLNEHFGSCGEISRVSIPKDFESGCPKGFAYMDFKDSSSMKKALELNETELAGGYYLSVEEAKPRSDGFGSGGRGGGRFGGRSNEGGRFGGRSGGGRFGGGRGGSDRGRGGRGRGGGRGFGNKPTFAAEGKKTTFADDD 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00893 680 CDD RRM1_NUCLs 426 502 IPR034349 -
Arst3g00893 680 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 425 501 IPR000504 GO:0003723
Arst3g00893 680 MobiDBLite consensus disorder prediction 272 297 - -
Arst3g00893 680 MobiDBLite consensus disorder prediction 411 425 - -
Arst3g00893 680 SUPERFAMILY RNA-binding domain, RBD 415 522 IPR035979 GO:0003676
Arst3g00893 680 MobiDBLite consensus disorder prediction 16 78 - -
Arst3g00893 680 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 523 605 IPR000504 GO:0003723
Arst3g00893 680 MobiDBLite consensus disorder prediction 333 350 - -
Arst3g00893 680 MobiDBLite consensus disorder prediction 1 425 - -
Arst3g00893 680 SUPERFAMILY RNA-binding domain, RBD 521 637 IPR035979 GO:0003676
Arst3g00893 680 MobiDBLite consensus disorder prediction 604 680 - -
Arst3g00893 680 Coils Coil 26 57 - -
Arst3g00893 680 MobiDBLite consensus disorder prediction 86 109 - -
Arst3g00893 680 Gene3D - 507 622 IPR012677 -
Arst3g00893 680 FunFam Nucleolin 2 400 509 - -
Arst3g00893 680 MobiDBLite consensus disorder prediction 384 407 - -
Arst3g00893 680 MobiDBLite consensus disorder prediction 180 229 - -
Arst3g00893 680 MobiDBLite consensus disorder prediction 359 376 - -
Arst3g00893 680 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 525 594 IPR000504 GO:0003723
Arst3g00893 680 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 427 494 IPR000504 GO:0003723
Arst3g00893 680 Gene3D - 345 506 IPR012677 -
Arst3g00893 680 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 206 568 - -
Arst3g00893 680 SMART rrm1_1 426 497 IPR000504 GO:0003723
Arst3g00893 680 SMART rrm1_1 524 601 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00893 Arst-Chr3 6555272 6560929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00893 406 602 Eukaryotic Initiation Factors Gene Family AT4G34110 30.144 7.37e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00893 K11294 - ahf:112789008 733.021