Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00892 ATGGCCAAGACTAGCAAGAAATCAGCTTCCAAGGTTGAGACTGCTCCACCTGTCAAAAAGGGAAAGAGGCAGGCAGATGAGGAACTTGAGAAGAAAGTTAGTTTAAAGAAACAGAAGATAGAAGAGGCTGCTCAGAAGCAAAAGAAGGAAGTGAAGGTGCAGAAGAAAAAGGAGGAAAGTAGTTCAGATGATTCTTCTTCAGATTCTGAAGATGAGAAACCTGCTACCAAAGTTGCTGTTGCTTCAAAGAAGCAGCCTGCTAAGAACGGCACTTTAAGCTCCCCTGCAAAGAAAGCCAAGCCAGCTAGTAGTTCTAGCTCTGATGATTCTGCTTCAGAGTCTGAAGATGAGAAACCTGCAGCAAAGGCTCCTCCAAAAAGTCAGGCTGCAAAAAATGTTGCTCCAGCAAAGAAAGTCAAGCCAGCTTCCTCTTCAAGTTCTGAATCCTCAGATGATGACTCTGATGACGACGAAGTGCCCAAATCCAAGGTGCTGCCTGCTGTGGTTAAGAATGGATCTGCTTCTGCAAAGAAACCAAGTGAAAGCTCCGAGTCTGAGGACAGCAGCTCTGGGGAGGAAAATAAAGCAAAATCAAGCAAAAAGGTGCCTGCTAAGAAGGTTGAATCAGAGTCATCCTCTGATAGTAGCTCTGATGAAGAAGATGAGAAAAAACCAGTAGCCAAATCATCTGCAGTTCCAAGTAAGAAAGTTGAGACAACTGAAACTTCAGATGATGATTCAAGTGAAAGCTCTGATGATGAAGAAAATGGTGCAAAACCTACTGCAAATGCGGCTTCCAAGCCTTCTGCTATAGCTAAGAAGAACGATGACAGTGACAGTTCAGATTCTGATGATAGCAGCTCCGAAGATGAGAAGAAAACTGCTCCCAAGACTGTTTCCAATGCCAAGTCAGTACCCGTGCCAAAGCCTGCCAAGAAGTCTAGTAATTCTAGTGAGAGTGAGTCGGATGAGGAAGAGGACTCATCTGATAGTGAATCTGAAGATGAAAAGAAAACTGCTAAAAGCTCCGGTCAGGGAAAAATGGATGTTGATGAAGAAGAGAGCTCTGATGAAAGTGATGACGAGCCAAAAAAGCCTGTGAAAGTTTCAAAAGAAAGCAGTGATAGTTCAGATGACAGTGATGAGGAAGAAGAGAAACCTTCTAAAACTCCTCAGAAAAGTGCCAAGGATGTGGAGATGGTTGATGCTGACTCAGCAAAGAAAGTTCCTAAAACCCCTTCTACACCTAGTGCTGCAACAGGTGGTACAAAGACACTATTTGTTGGAAACCTGTCATTTAATGTGCAACGATCTGACGTTGAGGAGTTTTTCAAAGATTGTGGAGAAGTTGTTGATGTTCGTTTTTCTGTTGACGATACTGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCTACTGCAGAGGCAGCACAAAGTGCTCTTGAATTGAATGAGCATGAGTTGTTGAATCGTCCTGTTAGGCTTGATTTAGCTCGTGAAAGAGGTGCATATACCCCTGGTGGCAGCAATTCCTTCCAGAAAGGTGGTCAGCGTCAATCTGGTCAAACTATATACATAAGGGGTTTTGATAAATCTCTTGGAGAAGAAGAGATAAGAGCTAGCCTAAATGAGCATTTTGGTTCGTGCGGGGAGATCTCGAGGGTGTCAATCCCAAAAGATTTTGAGTCTGGATGTCCTAAAGGTTTTGCCTACATGGACTTCAAGGATTCTTCTAGCATGAAGAAAGCTCTAGAACTCAATGAGACTGAACTTGCTGGTGGTTATTACCTCTCAGTTGAAGAAGCCAAACCTAGATCTGATGGCTTTGGTTCAGGTGGAAGAGGTGGCGGTCGATTTGGAGGTAGGAGTAATGAAGGTGGTCGATTTGGAGGAAGGAGTGGTGGTGGCCGATTTGGTGGTGGAAGGGGTGGTAGTGATCGAGGCAGAGGTGGTCGAGGAAGAGGTGGTGGAAGGGGTTTTGGAAATAAACCGACATTTGCTGCAGAAGGAAAAAAGACCACATTTGCCGATGACGACTAG 2040 0.4431 MAKTSKKSASKVETAPPVKKGKRQADEELEKKVSLKKQKIEEAAQKQKKEVKVQKKKEESSSDDSSSDSEDEKPATKVAVASKKQPAKNGTLSSPAKKAKPASSSSSDDSASESEDEKPAAKAPPKSQAAKNVAPAKKVKPASSSSSESSDDDSDDDEVPKSKVLPAVVKNGSASAKKPSESSESEDSSSGEENKAKSSKKVPAKKVESESSSDSSSDEEDEKKPVAKSSAVPSKKVETTETSDDDSSESSDDEENGAKPTANAASKPSAIAKKNDDSDSSDSDDSSSEDEKKTAPKTVSNAKSVPVPKPAKKSSNSSESESDEEEDSSDSESEDEKKTAKSSGQGKMDVDEEESSDESDDEPKKPVKVSKESSDSSDDSDEEEEKPSKTPQKSAKDVEMVDADSAKKVPKTPSTPSAATGGTKTLFVGNLSFNVQRSDVEEFFKDCGEVVDVRFSVDDTGRFKGFGHVEFATAEAAQSALELNEHELLNRPVRLDLARERGAYTPGGSNSFQKGGQRQSGQTIYIRGFDKSLGEEEIRASLNEHFGSCGEISRVSIPKDFESGCPKGFAYMDFKDSSSMKKALELNETELAGGYYLSVEEAKPRSDGFGSGGRGGGRFGGRSNEGGRFGGRSGGGRFGGGRGGSDRGRGGRGRGGGRGFGNKPTFAAEGKKTTFADDD 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00892 679 Gene3D - 344 506 IPR012677 -
Arst3g00892 679 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 205 565 - -
Arst3g00892 679 FunFam Nucleolin 2 399 508 - -
Arst3g00892 679 MobiDBLite consensus disorder prediction 272 297 - -
Arst3g00892 679 Gene3D - 507 621 IPR012677 -
Arst3g00892 679 CDD RRM1_NUCLs 425 501 IPR034349 -
Arst3g00892 679 MobiDBLite consensus disorder prediction 16 78 - -
Arst3g00892 679 MobiDBLite consensus disorder prediction 333 350 - -
Arst3g00892 679 SUPERFAMILY RNA-binding domain, RBD 520 636 IPR035979 GO:0003676
Arst3g00892 679 Coils Coil 26 57 - -
Arst3g00892 679 MobiDBLite consensus disorder prediction 383 406 - -
Arst3g00892 679 SUPERFAMILY RNA-binding domain, RBD 414 521 IPR035979 GO:0003676
Arst3g00892 679 SMART rrm1_1 425 496 IPR000504 GO:0003723
Arst3g00892 679 SMART rrm1_1 523 600 IPR000504 GO:0003723
Arst3g00892 679 MobiDBLite consensus disorder prediction 86 109 - -
Arst3g00892 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 522 604 IPR000504 GO:0003723
Arst3g00892 679 MobiDBLite consensus disorder prediction 603 679 - -
Arst3g00892 679 MobiDBLite consensus disorder prediction 180 229 - -
Arst3g00892 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 524 593 IPR000504 GO:0003723
Arst3g00892 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 426 493 IPR000504 GO:0003723
Arst3g00892 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 424 500 IPR000504 GO:0003723
Arst3g00892 679 MobiDBLite consensus disorder prediction 410 424 - -
Arst3g00892 679 MobiDBLite consensus disorder prediction 360 375 - -
Arst3g00892 679 MobiDBLite consensus disorder prediction 1 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00892 Arst-Chr3 6555272 6560930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00892 405 601 Eukaryotic Initiation Factors Gene Family AT4G34110 30.144 7.35e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00892 K11294 - ahf:112789008 746.117