LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g00891	ATGGCAGCTACATTGCCTTCGAACATCATGCCATCCCCTTCGAGTCCCGATTGGTTGAACAAAGCCGACAATGCGTGGCAACTCGTCGCGGCAACACTCGTCGGCCTTCAAAGTGTTCCTGGACTCATAATCTTGTATGGAGGAGCAGTGAAGAAAAAATGGGCAGTGAACTCAGCGTTCATGTGCTTGTATGCATTTGCATGTGTCTTCTTCTGTTGGATTGTATGGGGTTATAGAATGTCCTTTGGTGATAAGCTTGCACCATTTTGGGGTAAAGCTGCGGTTGCACTTGATGAAAAGTACCTTTTTGACCCTGCATTTTCAGGGATGTTCCCAAATGCAACAATGGTGTATTTCCAGGGTGTGTTTGCAGCCATAACATTGATTTTGATAGCTGGTGCTTTGTTGGGAAGAATGAACTTTTATGCATGGATGGCTTTTGTGCCTCTTTGGCTCACTTTCTCATACACCTTCACTGCATTCAGTATATGGAGTCCAAATGGGTTCTTGTTCAAGCTTGGGATAATTGATTACTCTGGTGGATATGTTATTCATTTGTCTTCTGGTGTTGCTGGATTCACTGCTGCTTATTGGGTTGGACCACGTCTTAACAAGGATAGAGAAAGGTTTCCTCCAAACAACATCCTACTGATGTTGGCTGGGGCTGGTTTACTCTGGATGGGGTGGACCGGCTTCAATGGCGGCGACCCCTACTCAGTAGGCCTGGATTCCTCCCTGGCTGTGTTGAACACTCATGCTTGCACTGCCACCAGCTTGCTCACTTGGGTCATTCTTGATGTCATCTTCTTCCGCAAACCCTCCGTCATTGGTGCTGTTCAAGGCATGATCACCGGCTTGGTCTGCATTACCCCTGCCGCAGGAGTTGTGCAAGGATGGGCAGCAATTCTAATGGGGATGCTATCAGGCTCAATTCCATGGTTCACAATGATGGTAGTTCACAAGAGATCAAAGCTTCTCCAAAAGGTGGATGACACAATGGCAGTGTTGCACACTCATGCCATTGCAGGAACCCTTGGAGGAGTCCTTTCAGGCCTATTTGCTGTGCCAAAGCTCAACTTCTTGTTCTATGGTTCTTACAACAAATATGTTGGACTCTTCTATGGCCTCAAAATGGGAATGAGCAAAACAGGGTTTAGACAAATATGGATTCAGTTGGTTGGGATTTTCTTTGTGGTCACATTGAATGTGATTAGCACAAGCTTGATATGCCTGTTGATTAGGATGTTTATTCCTCTGAGGATGTCTGAGGAAGACATGGAGATTGGTGATGAAGCTGCCCATGGTGAAGAGGCTTATGCTATATGGGGTCAAGGTGATAAGCTTGAGAATGCAAGCTCTAAGTATGCAAGTTCAATGTATGATGATGTTGAAGCAGCCACCAATAAGAAAAAGCGTAGTGGCCAAGTTGAGATGATGTAG	1440	0.4569	MAATLPSNIMPSPSSPDWLNKADNAWQLVAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMCLYAFACVFFCWIVWGYRMSFGDKLAPFWGKAAVALDEKYLFDPAFSGMFPNATMVYFQGVFAAITLILIAGALLGRMNFYAWMAFVPLWLTFSYTFTAFSIWSPNGFLFKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYSVGLDSSLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAILMGMLSGSIPWFTMMVVHKRSKLLQKVDDTMAVLHTHAIAGTLGGVLSGLFAVPKLNFLFYGSYNKYVGLFYGLKMGMSKTGFRQIWIQLVGIFFVVTLNVISTSLICLLIRMFIPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENASSKYASSMYDDVEAATNKKKRSGQVEMM	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g00891	479	ProSitePatterns	Ammonium transporters signature.	177	202	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Arst3g00891	479	PRINTS	Rhesus blood group protein signature	247	269	IPR002229	GO:0005886
	Arst3g00891	479	PRINTS	Rhesus blood group protein signature	216	234	IPR002229	GO:0005886
	Arst3g00891	479	PRINTS	Rhesus blood group protein signature	120	136	IPR002229	GO:0005886
	Arst3g00891	479	PRINTS	Rhesus blood group protein signature	340	356	IPR002229	GO:0005886
	Arst3g00891	479	Gene3D	Ammonium transporter AmtB like domains	8	443	IPR029020	-
	Arst3g00891	479	FunFam	Ammonium transporter	7	442	-	-
	Arst3g00891	479	NCBIfam	ammonium transporter	23	439	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Arst3g00891	479	PANTHER	AMMONIUM TRANSPORTER MEP2	7	451	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Arst3g00891	479	SUPERFAMILY	Ammonium transporter	18	421	-	-
	Arst3g00891	479	Pfam	Ammonium Transporter Family	25	439	IPR024041	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g00891	Arst-Chr3	6552102	6554312	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g00891	114	466	Inorganic Solute Cotransporters	AT2G38290	62.606	6.76e-147	422

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g00891	K03320		-	gmx:100787856	813.913