LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g00870	ATGGCTCCTAAACGAGGTGGAAAAGCGCCAGTTCCAGCTTCGAAGAAGAAGCCTGAGAAGGTTACGAACCCGTTGTTCGAGAAGCGTCCTAAGCAGTTCGGGATCGGAGGAGCATTGCCACCAAAGAGGGATTTGACTCGTTTCGTGAAGTGGCCTAAGACCGTACAAATCCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACCAAGACCCTTGACAAGAACCTTGCAACCAGCCTTTTCAAGATACTTCTGAAGTACAGGCCAGAGGATAAAGCTGAAAAGAAGGAGCGACTTTTGAAAAGGGCCCAGGCCGAGACTGAGGGCAAAACCGTTGAAGCTAAAAAGCCTATTGTTGTGAAGTATGGTCTCAATCACGTTACCTACCTTATTGAGCAGAACAAAGCTCAGTTGGTTGTGATTGCTCATGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCCGCATTGTGTAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAGGCTCGCCTTGGATCGATTGTACACAAGAAAACGGCATCTGTTTTGTGCTTGACCAGTGTCAAGAACGAAGACAAATTAGAACTGACTGTGTCTTATGTATTGGTTTGTTTCCAGGCTAACTTCAATGACAAGTATGATGAGTACAGAAAGAAATGGGGTGGCGGTATCATGGGTTCTAAATCCCAAGCCAAAACTAAGGCAAAGGAGAGGCTTCTTGCTAAGGAGGCTGCTCAGAGGATGTCTTAA	786	0.4644	MAPKRGGKAPVPASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAETEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLELTVSYVLVCFQANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g00870	261	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	43	244	-	-
	Arst3g00870	261	MobiDBLite	consensus disorder prediction	1	37	-	-
	Arst3g00870	261	Gene3D	-	51	236	IPR029064	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A family signature	91	104	IPR001921	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A family signature	47	64	IPR001921	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A family signature	125	145	IPR001921	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A family signature	220	240	IPR001921	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A family signature	30	47	IPR001921	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A family signature	67	86	IPR001921	-
	Arst3g00870	261	SUPERFAMILY	L30e-like	89	232	IPR029064	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A/RS6 family signature	148	161	IPR018492	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A/RS6 family signature	164	174	IPR018492	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A/RS6 family signature	174	188	IPR018492	-
	Arst3g00870	261	PRINTS	Ribosomal protein L7A/RS6 family signature	129	143	IPR018492	-
	Arst3g00870	261	FunFam	60S ribosomal protein L7a	51	236	-	-
	Arst3g00870	261	MobiDBLite	consensus disorder prediction	12	26	-	-
	Arst3g00870	261	ProSitePatterns	Ribosomal protein L7Ae signature.	167	184	IPR004037	GO:0042254\|GO:1990904
	Arst3g00870	261	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	116	207	IPR004038	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g00870	Arst-Chr3	6367872	6369928	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g00870	1	261	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	83.142	4.80e-162	447

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g00870	K02936		-	gmx:100792324	465.307