Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00818 ATGAGTAGGGTTTGCGGTAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGTTTCATAACCCCCGACGATGGCGGCGAAGAACTCTTTGTTCATCAATCTTCGATTCGATCCGAAGGGTTTCGCAGCCTCGCCGAGGGTGAGTCCGTTGAGTTCGCCATAGAGTCCGATCCTGATGGACGCACCAAGGCCGTTGATGTCACTGGACCTGATGGCTCTAACGTTCAGGGGAGTCGCCGTGGTGGAGGCGGTGGCGGAGGTGGTGGAAGGAGTTACGGCGGTGGACGAGGCGGCGGCGGAGGCTATGGTGGTGGATATGGTGGTGGAGGAGGCTATGGCGGCGGCGGCGGTGGTGGCGGAAGCTGCTACAACTGTGGGGATTCTGGTCATTTTGCAAGGGACTGCCCAACAGGCTCTCGCTGA 423 0.5887 MSRVCGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGESVEFAIESDPDGRTKAVDVTGPDGSNVQGSRRGGGGGGGGGRSYGGGRGGGGGYGGGYGGGGGYGGGGGGGGSCYNCGDSGHFARDCPTGSR 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00818 140 Pfam 'Cold-shock' DNA-binding domain 6 69 IPR002059 GO:0003676
Arst3g00818 140 PRINTS Cold shock protein signature 6 21 IPR002059 GO:0003676
Arst3g00818 140 PRINTS Cold shock protein signature 42 60 IPR002059 GO:0003676
Arst3g00818 140 PRINTS Cold shock protein signature 27 36 IPR002059 GO:0003676
Arst3g00818 140 ProSiteProfiles Zinc finger CCHC-type profile. 122 136 IPR001878 GO:0003676|GO:0008270
Arst3g00818 140 ProSitePatterns Cold-shock (CSD) domain signature. 17 36 IPR019844 -
Arst3g00818 140 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Arst3g00818 140 SUPERFAMILY Retrovirus zinc finger-like domains 104 137 IPR036875 GO:0003676|GO:0008270
Arst3g00818 140 Pfam Zinc knuckle 121 136 IPR001878 GO:0003676|GO:0008270
Arst3g00818 140 ProSiteProfiles Cold-shock (CSD) domain profile. 3 69 IPR002059 GO:0003676
Arst3g00818 140 MobiDBLite consensus disorder prediction 56 110 - -
Arst3g00818 140 CDD CSP_CDS 6 69 IPR002059 GO:0003676
Arst3g00818 140 FunFam Cold shock protein 1 1 68 - -
Arst3g00818 140 SMART csp_8 5 70 IPR011129 GO:0003676
Arst3g00818 140 Gene3D - 1 81 IPR012340 -
Arst3g00818 140 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 137 - -
Arst3g00818 140 SUPERFAMILY Nucleic acid-binding proteins 3 69 IPR012340 -
Arst3g00818 140 Gene3D - 117 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00818 Arst-Chr3 5862178 5863114 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Arst3g00818 CSD 5.3e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00818 - K09250 adu:107476544 195.282