Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00700 ATGAAGATCCAGTGTGATGTGTGTCACAAAGTGGAGGCCTCTTTCTTCTGTCCCTCGGATGAAGGAGCTCTATGCCATGGCTGTGATCGCACAATACACTGTGCCAACAAGGTTGCAACCAAACACACGCGCTTCTCTCTGCACCACCCTAACTCCAAAGACGCCCCTCTGTGTGATATCTGCCAAGAGAGACGTGCATATATATTTTGCCAAGAAGACAGAGCGATATTATGCAGTGAATGTGACGTTTCTATCCATGGAGCCAATGAATACACTAAGAAGCATAACAGGTTTCTTCTGACAGGTGTAAAGCTTGGTGCTGCTTCTTCTTCTTCTTCATCAGAGCCAACATCAATGTCCTCGAGTAGAGCCACAACAAGCTCTGAAGCAGCAAATAACCAGAATAATAATAATTATTATATGGGTAGTGACACGGGTTCAGTTTCAACAAGCAGCATTTCTGAGTATTTGATTGAGACCATACCCGGTTACTGCATGGAAGACCTTCTCGATGCTTCATTTCCGCCAAATGGTTTCTGA 540 0.4463 MKIQCDVCHKVEASFFCPSDEGALCHGCDRTIHCANKVATKHTRFSLHHPNSKDAPLCDICQERRAYIFCQEDRAILCSECDVSIHGANEYTKKHNRFLLTGVKLGAASSSSSSEPTSMSSSRATTSSEAANNQNNNNYYMGSDTGSVSTSSISEYLIETIPGYCMEDLLDASFPPNGF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00700 179 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Arst3g00700 179 CDD Bbox1_BBX-like 5 47 - -
Arst3g00700 179 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 - -
Arst3g00700 179 FunFam B-box zinc finger protein 21 1 98 - -
Arst3g00700 179 CDD Bbox1_BBX-like 57 100 - -
Arst3g00700 179 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Arst3g00700 179 SMART bboxneu5 4 47 IPR000315 GO:0008270
Arst3g00700 179 SMART bboxneu5 53 100 IPR000315 GO:0008270
Arst3g00700 179 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270
Arst3g00700 179 Gene3D Classic Zinc Finger 1 99 - -
Arst3g00700 179 MobiDBLite consensus disorder prediction 108 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00700 Arst-Chr3 4944323 4945652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00700 1 179 C2C2-CO-like Transcription Factor Family AT1G75540 48.792 1.64e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Arst3g00700 zf-B_box 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00700 - - mtr:11420444 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00700 3 4944323 4945652 Arst3g00700 3 4944323 4945652 ECH
Arst3g00700 3 4944323 4945652 Arst3g00718 3 5110874 5113754 ECH
Arst3g00700 3 4944323 4945652 Arst5g01116 5 11313248 11315579 ECH