Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00670 ATGGCTGAGAACTTTGATTACCTTGCTGATGTGAATGCAAAAACTCTTCATTGGAGTTTCAAGGTCTTTGTTGTTAGGGCATGGGATGTTCCAAGTAGATTTAATGACAAAGAGGTTATGAGCATGGAGCTGGTGCTTCAGGACAGTAAGGGTCATAGGTTGCAAACTTCGATACCAAAACCATTGGTTAAGAAGTGGAAGGATGTCATAGTGGAGTTTCAGATGTACACGATGAAAAATTTCGTTGTTTTGGATAACACTACATACCCCAAGGTAACTCCGGATAAATATATATTAGTTTTCTCACACCGGACCAGGGTTCATCACGTTGAACATCCAAGCTTTCCACTTGATGCCTTTCGCTTGAAGTCATTTAAGGAATTGCTTAATGCTGATAAGTTGGACGACTCTGAACTTATTGATATAATTGGTGAGGTTGTAGGCAAAGAGGATCCCAGAGATTTGGTAACCAGCAAAGGGGTGGAGACTAAACGGTTGGCCATAATCCTACAAGATTTAGACAACAATAAGATTAGCTGTGCTCTGTTTGGTAAAATGGTAGACGAGCTTTTACCTCATCTTCACGATGGAAGGGTTGAACCTCTCATTGTAGTGCTCCAATATTTTAAACCTAATAGATGGAATGGTAAAACATCTGTCCAGAGTCATTTCTATGTTTCCAAGCTGCACATCAATGATGGTTTAAAAGAAGTTGTTGGATTCCGAAATAGATTGCTTAGCGGAGTGGCTGCAAGTTCCTCTAGGATTAGCCAAGTTTCATCTCAGGGGGGATGGTCTGGAGCTGATGAGATAAACCAAGGTGCTGTTTTGGTGAAGACTATTGAGCAAGCACTTAATGTTAAAGAGGAATGTCCGATATGGATATGTGCAAGCATTGTATCTTTAAATGTTGGCAAGGATGATTGGTTTTACAAATCATGCAGAAAATGTCCAAAAAAAGTTGATACTCCTATTGGAAATAGATATGAATGTACCAAGTGTGGACACACTCATGGTTGTGCTTCTTTGAGGTTCAAGGTACAGGTCATGGTCCACGATGGAACTGGGAGTATCACCCTCTTGCTTTGGGATAAGGAAACAACTCAACTTTGTGGAAAGAAAGCTGAACAAGTAATGGAGGATGATGTTATAGGTGACGATGCTTATCCACCCACCTTTGATAACATGATGGATAGAAAAGTTCTATTTAAGATTAATGTGAAGTCTGCTAATATCAAGGGTTTTGATCAAATATATACTGTTATGAAAATTTGTGATGATGAAGATATCATTGAGAAGAATATGCCCAAAGAAATTGCTGAGAGTACATCTACATTTTTTACTGAAATTGGGGGCAGCAACTCCTTGGACATGTAA 1377 0.3929 MAENFDYLADVNAKTLHWSFKVFVVRAWDVPSRFNDKEVMSMELVLQDSKGHRLQTSIPKPLVKKWKDVIVEFQMYTMKNFVVLDNTTYPKVTPDKYILVFSHRTRVHHVEHPSFPLDAFRLKSFKELLNADKLDDSELIDIIGEVVGKEDPRDLVTSKGVETKRLAIILQDLDNNKISCALFGKMVDELLPHLHDGRVEPLIVVLQYFKPNRWNGKTSVQSHFYVSKLHINDGLKEVVGFRNRLLSGVAASSSRISQVSSQGGWSGADEINQGAVLVKTIEQALNVKEECPIWICASIVSLNVGKDDWFYKSCRKCPKKVDTPIGNRYECTKCGHTHGCASLRFKVQVMVHDGTGSITLLLWDKETTQLCGKKAEQVMEDDVIGDDAYPPTFDNMMDRKVLFKINVKSANIKGFDQIYTVMKICDDEDIIEKNMPKEIAESTSTFFTEIGGSNSLDM 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00670 458 SUPERFAMILY Nucleic acid-binding proteins 4 114 IPR012340 -
Arst3g00670 458 Gene3D - 114 253 IPR012340 -
Arst3g00670 458 SUPERFAMILY Nucleic acid-binding proteins 122 245 IPR012340 -
Arst3g00670 458 CDD RPA1_DBD_C 278 424 IPR047192 -
Arst3g00670 458 Gene3D - 260 440 IPR012340 -
Arst3g00670 458 Pfam Domain of unknown function DUF223 43 125 IPR003871 -
Arst3g00670 458 Pfam Replication factor-A C terminal domain 304 424 IPR013955 -
Arst3g00670 458 CDD RPA1_DBD_A_like 21 107 - -
Arst3g00670 458 Gene3D - 7 112 IPR012340 -
Arst3g00670 458 SUPERFAMILY Nucleic acid-binding proteins 279 426 IPR012340 -
Arst3g00670 458 CDD RPA1_DBD_B_like 141 245 - -
Arst3g00670 458 PANTHER OS03G0429900 PROTEIN 8 414 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00670 Arst-Chr3 4717627 4720348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00670 8 378 Core DNA Replication Machinery Family AT2G06510 22.139 2.13e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00670 - - ahf:112803472 591.652