Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00577 ATGGAAGATTACGCTGCCAGCAGCGATGACGAATACCGTTACTCCGATCCGGAGGACTCCGTCGACGCCTTCGATAACGATGATAACGATTATCAATTAGTCTCTTCCAAGGGTCCCTCTACTCAGGTGATTACGAAGGAGTCATTGCTAGCTGCACAGAAGGAGGATTTACGCAGGGTGATGGACATGCTATCGGTGAGGGAGCAACATGCACGTACCCTGCTTATTTTTCATCGTTGGGATGTGGAGAAGTTGTTTGCCGTGTATGTAGATAGGGGAAAACATTTTCTGTTTTCTGAAGCTGGTGTTACAGTGGATGAACATCGCGACTCTAATTCGTCAGCTGCTCCTTCGACAATAATGTGCGAAATTTGCATAGAGGATGTTCCTAGTGATGAAACAACAAAAATGGACTGCGGTCACTGTTTTTGCAACGGCTGTTGGACAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGCAAGCGAATCAGATGCATGGCACACAAATGTTATTCCATTTGTGATGAAGCTGTTGTCAGAACTCTTCTCAGCAAAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTATATTGAAGACAACAAGAGAGTTAAATGGTGTCCTAGTACGCCTCATTGTGGGAATGCAATACGTGTTGAGGACGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGCTTCAGTTGCTTGTCAGAAGCACATTCCCCATGCTCATGTTTGATGTGGGAGCTTTGGGCCAAAAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACCAAGCCTTGTCCAAAGTGCCACAAACCGGTCGAGAAAAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCTTTTTGTTGGTTGTGTGGTGGAGCTACTGGTCGAGAGCATACCTGGTCAAGCATTGCTGGTCATAGCTGTGGTCGCTATAAAGAGCAAGAAAAAACAGCTGAACGGGCAAAGAGGGATCTGTATCGTTATATGCATTATCATAATCGTTACAAAGCTCACACAGATTCCTTTAAGCTTGAGAGTAAACTGAAGGAGACTATACAAGAGAAGATTGCTGTCTCAGAAGAAAAAGATTCTACGCTAAGGGATTATAGTTGGGTAAATAATGGGCTCTCTAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATGCATTTGCGTTTTACATGTTTGGTGACGAGCTATTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTGTTTGAGGATCAGCAGCAGCAGCTTGAGGCAAACGTTGAAAAGCTCTCCAAAATTTTAGAGGAGCCTTTTGAAACTTTTGAAGATGATAAAGTCATGGAGATAAGGATGCAGATAATCAATCTGACCACTATCATTGACAAACTTTGTCAAAAAATGTATGAGTGTATTGAGAATGATTTACTAGGTTCTCTCCATATTGGTGTTCACAACATTGCTCCATACAAGTCAAAGGGGATCGAGAAGGCATCAGAACTTTCAGTTTGTTGGACAAATGAGGCCAATAATACCGGTGTAACAGCAGAACTCGATAGGCCTTCCGGATCAGGGAGCTCAGACGATAGTGGATGCTCTTCTCGCAAGCGCGCTAGGAAAGAGGGCCTCGGAGGCGCGTTTTTTGATCTAAACTTACCAGCAGAGTTTGTAGACAGAAATTGA 1746 0.4261 MEDYAASSDDEYRYSDPEDSVDAFDNDDNDYQLVSSKGPSTQVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVEKLFAVYVDRGKHFLFSEAGVTVDEHRDSNSSAAPSTIMCEICIEDVPSDETTKMDCGHCFCNGCWTEHFIVKINEGQSKRIRCMAHKCYSICDEAVVRTLLSKKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQEKIAVSEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFEDDKVMEIRMQIINLTTIIDKLCQKMYECIENDLLGSLHIGVHNIAPYKSKGIEKASELSVCWTNEANNTGVTAELDRPSGSGSSDDSGCSSRKRARKEGLGGAFFDLNLPAEFVDRN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00577 581 ProSiteProfiles Zinc finger RING-type profile. 122 170 IPR001841 -
Arst3g00577 581 Pfam IBR domain, a half RING-finger domain 193 255 IPR002867 GO:0008270
Arst3g00577 581 Gene3D - 251 498 - -
Arst3g00577 581 SUPERFAMILY RING/U-box 193 261 - -
Arst3g00577 581 MobiDBLite consensus disorder prediction 1 27 - -
Arst3g00577 581 MobiDBLite consensus disorder prediction 535 558 - -
Arst3g00577 581 SMART ibrneu5 193 255 IPR002867 GO:0008270
Arst3g00577 581 SMART ibrneu5 263 328 IPR002867 GO:0008270
Arst3g00577 581 SUPERFAMILY RING/U-box 118 205 - -
Arst3g00577 581 CDD Rcat_RBR_ARI1-like 276 329 - -
Arst3g00577 581 FunFam RBR-type E3 ubiquitin transferase 251 498 - -
Arst3g00577 581 CDD BRcat_RBR_ANKIB1 200 264 - -
Arst3g00577 581 MobiDBLite consensus disorder prediction 535 552 - -
Arst3g00577 581 FunFam RBR-type E3 ubiquitin transferase 116 207 - -
Arst3g00577 581 Pfam Ariadne domain 332 581 IPR045840 -
Arst3g00577 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 208 IPR013083 -
Arst3g00577 581 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 400 IPR031127 GO:0004842|GO:0016567
Arst3g00577 581 CDD RING-HC_RBR_TRIAD1 121 171 - -
Arst3g00577 581 ProSiteProfiles TRIAD supradomain profile. 118 332 IPR044066 -
Arst3g00577 581 SUPERFAMILY RING/U-box 263 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00577 Arst-Chr3 3979956 3983831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00577 61 556 ARIADNE family AT2G16090 70.341 0.0 734