Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00561 ATGCAGATGCATCACCTTCATCATCCTAATTCAACCACCATCATGCCACCTTCTTCTTCTCATCATTGGATATGGCCTCCAACACCATCTCTATCTCCATCTCCATCTCCATCCGCCACCTTCGCCAAGTCAACGCTGCCGCCACCGTCACCTTCTAAGTCTCCGGTGGACTTCAGCCCTCCCCTCATAGCAATGGTTGTTGTCATCGCCGCCGCCTTCCTCCTCGTTACATACTCCCGTCTCATAGCCCGCCACCTCACTCCTCCACTCCACCGCCTCATAAGACGCTTCCGCCGTCGCCGCCGCACTCATTCCTTCCTCCCTTCCTCCTCCGGCGACCTAGACTCCCTCCCTTACTACTACGACTCCCCCTTCGACCCTCATATCCCACCCTCCTCCTTCTCGCCTTACGGCCTCGACGACTCCGTCATCAAAACCATCCCTTTCTCCCTTTACGCCGCCCTATACGCCGGCGAACTCAACAGCACCTCCTCTCGCCGTTCATCTTCACGCCGCGACTGCGCCGTTTGCCTCTTCGAATTCGAAGACGATGATTACGTTCGAACCTTGCCTCTTTGCTCACACACCTTCCATGTTGATTGCATCGATGCTTGGCTTCGTTCCCACGCAAACTGCCCTCTCTGCCGCGCCGGGGTTCTCTCCGCCGCCTCGCCGTTTACTCCCATGTTCGCCGCCAGGATTCGACCAAGTCTCGACGACGATGCCATCTTCCACCGGATAGCGGCGGAGCACACTCCGCCTCCGCCGGAGGACTATCGTCATGCTACGACGGCGGTTTCGGCGGCGCCGGAGATTACCGTGGAAGTTCCCGAGGAGGGGTTCAACGGGAGGGACTTTCTATTGAAACGTTCTTATTCGTTTGGGTTCGAAAGGAGCTTGGCGTCGGAGAGGATGTTGGTGATGGAGCCCGCGACGGCGTCCCCGTGGCGGTACCGGAGAGGAGGGAGCAGCAGCAGTTTCTGGAGCAAGAGACCTTCGCCGTTTGGGTCTATTGGGAAGCCGAGGGTGTTCTCTTTCAGATACTACAGAGGGATGAAGTCACCGTTTTTCCGGCGAAGAGGGTTTTTTCCGTTGTCGGAGTCAAGCATGAGGTACGCCGGTGGCGGGAGCTCGTCGCGGCGGAGTAAGTCCATCGCTAGCCCCATGTTCTTAAGGTCTTCCGTATTGACCTCGGCAGCTGGCGCGGCGGGGTTTTCGTCGAGCCGGCTGAGATGCGGAGATCCCGAGGCGCTGCTTTCGCCGGAGAGGTTCAACAGAAGATGA 1284 0.5826 MQMHHLHHPNSTTIMPPSSSHHWIWPPTPSLSPSPSPSATFAKSTLPPPSPSKSPVDFSPPLIAMVVVIAAAFLLVTYSRLIARHLTPPLHRLIRRFRRRRRTHSFLPSSSGDLDSLPYYYDSPFDPHIPPSSFSPYGLDDSVIKTIPFSLYAALYAGELNSTSSRRSSSRRDCAVCLFEFEDDDYVRTLPLCSHTFHVDCIDAWLRSHANCPLCRAGVLSAASPFTPMFAARIRPSLDDDAIFHRIAAEHTPPPPEDYRHATTAVSAAPEITVEVPEEGFNGRDFLLKRSYSFGFERSLASERMLVMEPATASPWRYRRGGSSSSFWSKRPSPFGSIGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYAGGGSSSRRSKSIASPMFLRSSVLTSAAGAAGFSSSRLRCGDPEALLSPERFNRR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00561 427 Pfam Ring finger domain 173 216 IPR001841 -
Arst3g00561 427 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Arst3g00561 427 MobiDBLite consensus disorder prediction 1 20 - -
Arst3g00561 427 FunFam RING-H2 finger protein ATL65 132 220 - -
Arst3g00561 427 CDD RING-H2_EL5-like 173 216 - -
Arst3g00561 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 220 IPR013083 -
Arst3g00561 427 PANTHER RING-H2 FINGER PROTEIN ATL16 43 236 IPR044600 GO:0016567|GO:0016740
Arst3g00561 427 SMART ring_2 174 215 IPR001841 -
Arst3g00561 427 SUPERFAMILY RING/U-box 173 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00561 Arst-Chr3 3906947 3909146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00561 52 427 C3H Transcription Factor Family AT3G18930 52.273 1.22e-101 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00561 - K19041 gmx:100795347 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00561 3 3906947 3909146 Arst3g00561 3 3906947 3909146 ECH