Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00546 ATGCCGCGCCCTTCTTTCCACAAGCTTGTTCTTCCTTCCACCATTCAATCTAGGCAATTGAGGATTCCAGATACTTTTCTGAATAGATATGGAGCTGACCTTTCTTCAATTGCTACCTTCTCAGTTCCTGATGGCAGCATTTGGCGTGTCAGATTAAAGAAGTTGGACAATGGATTTTGGTTTGTTGATGGTTGGGCAGAATTCGTTCAACGCTACTCCATCGGTGTTGGATACTTGATAGTATTCCGATACGAAGGAAAGTCGACTTTCATTGTTCGTATCTTTAATTTGGCCACTTCTGAGATAAGCTATCAGTCACCCGTACGAAGCAGTAACGAAGGGGCTTACTTTGCAAACCGTCTTAAGATTTTTGAAGAATTGGAAGATGAAGACTCCGCTGAATATTCATCACCTTCCGGCCTTACTCCTGGTGCATTGCAAAATAAATTTACCCCTGAGAAGAATTATACTCCTCCACCATTGCAGAATCTATTTAATGGGTCCAAACTTAATAGCGTAAACTGGGGCGATAGTGCAAACACCCTCTCTTCAAGAAGTGCCAATTCGCTAGACAGTCAGTTGACCAGAGATATAGGTGTTCAGTTTAATGCAATTGAGTTTAAAAGGTCTACTGACGAATTGAAGTTGCGTACTTCTGTTGGCGAAAAGGAGAAGAAAGCTCCAAGAAAGAAGCGAAAATCAGATGGCCAGGAACCCTCTGAGGACCAAGAAGAGGAGGCAGAGATGCGATTTAGATTCTATGAAAGTGCATCGGCAAGAAAAAGAACTGTGACAGCAGAGGAAAGAGAAAGGGCCGTCAATGCAGCGAAGGCATTCGAACCACTTAATCCTTTCTGTCGTGTTGTCCTGCGGCCGTCCTACTTGTATAGGGGATGCATAATGTATTTGCCATCTTGCTTCGCGGAAAAGCATTTGAACGAGGTTTCAGGATTCATCAAACTTCAGCTCTCCGACGGGAGACAGTGGCCTGTTCGCTGCCTTTATAGAGGAGGCAGAGCTAAGCTGAGCCAGGGGTGGTTTGAATTCGCGATAGAGAACAACCTTGGCGAGGGAGACGTCTGTGTGTTTGAGCTCCTTCCGATGAAGGAGGTGATACTTCAAGTTACACTGTTTCGCGTCACTGAGGACGATGGATTCTTCAGCCCTCCTCCTCTGCACCAGCTCCAGCCGAGCCAAAATCTCGTGAGTCAATCTAAAATGTTGAACGCTCACATGCATCAGCGCCTCGGCTCGGGTAAACTGATCAGGAACTAA 1275 0.4565 MPRPSFHKLVLPSTIQSRQLRIPDTFLNRYGADLSSIATFSVPDGSIWRVRLKKLDNGFWFVDGWAEFVQRYSIGVGYLIVFRYEGKSTFIVRIFNLATSEISYQSPVRSSNEGAYFANRLKIFEELEDEDSAEYSSPSGLTPGALQNKFTPEKNYTPPPLQNLFNGSKLNSVNWGDSANTLSSRSANSLDSQLTRDIGVQFNAIEFKRSTDELKLRTSVGEKEKKAPRKKRKSDGQEPSEDQEEEAEMRFRFYESASARKRTVTAEERERAVNAAKAFEPLNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQLSDGRQWPVRCLYRGGRAKLSQGWFEFAIENNLGEGDVCVFELLPMKEVILQVTLFRVTEDDGFFSPPPLHQLQPSQNLVSQSKMLNAHMHQRLGSGKLIRN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00546 424 CDD B3_DNA 4 96 IPR003340 GO:0003677
Arst3g00546 424 Gene3D - 263 383 IPR015300 -
Arst3g00546 424 PANTHER B3 DOMAIN-CONTAINING 3 370 - -
Arst3g00546 424 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Arst3g00546 424 Gene3D - 1 98 IPR015300 -
Arst3g00546 424 SUPERFAMILY DNA-binding pseudobarrel domain 280 380 IPR015300 -
Arst3g00546 424 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Arst3g00546 424 SMART B3_2 6 98 IPR003340 GO:0003677
Arst3g00546 424 SMART B3_2 286 381 IPR003340 GO:0003677
Arst3g00546 424 MobiDBLite consensus disorder prediction 218 247 - -
Arst3g00546 424 CDD B3_DNA 284 379 IPR003340 GO:0003677
Arst3g00546 424 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677
Arst3g00546 424 Pfam B3 DNA binding domain 289 379 IPR003340 GO:0003677
Arst3g00546 424 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00546 Arst-Chr3 3804576 3807944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00546 1 385 B3 DNA Binding Superfamily AT3G18990 50.895 9.57e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst3g00546 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00546 - - adu:107476734 820.846