Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00525 ATGGAAGATCAGTTTTTCTCTGAGGGAGAGGGAATTGGGTATTGGACACCTCCTGGCGCTCAATTCGATGGACCAAGCATGATAGACAACGGAATAAAAAATCTTGTATCAGAGGAGATGCTTGACAACCTCCCTGATCTCATGAACTTCGATAACCTTGCTGGTTGGGGTAATATTCCATCTGTGACTGATCATAATTTAGATAATGAAATTTCATCACTTGCCTCTATGCAGTATTCTCCACCTGATGCATTCAGTTTAGTGGAACAGGACAATGATCCATACTTTATGACAAAAGATTGTGGAAATTATAATGCTACTGAAACCTCCTTGGGTTTCGATGAGAAGGCTGTGTTACAGCAATTGGAGACCCAACTTGGGTTGTCAGAAGATGCAAATGATATGAATAACATAAATGGATCACTTCGAGAATTGAGTGCTGCTGACATGGGAAATTGCTTGGTGCCTAGACCATTTGCTTGGTCGCTTGATGAGAGAATGCTGAGGGCTATGGACTTGTTTAAGGAATCAGTTGGTGATGGAATATTGACACAAGTTTGGGCACCAATGAAGCATGGTAATGACTTCATCTTAAGCACAAGCGAGCAACCCTATTTGCTAGATCACATGCTAGCTGGATACCGAGACGTGTCGAGGCAATTTACCTTTTCTGCTGAAGATAAACCAGGGTCTTTTCCAGGGCTTCCCGGACGTGTGTTTAACTCCCAAATTCCTGAATGGACCTCCAATGTTGGGTACTACAATAAAAGTGAGTACCTGAGGGTGGAGCATGCAATTAATCACGAGGTTCGTGGATCAATTGCGGTTCCCATAATTGATACGCTCGCTGAACCACCTTGTTGTGCTATACTAGAACTTGTCACTACAAAGGAAAAGACTGATTTTGACAGAGAACTAGAAATTGTTAGCAGTGCACTCCAGCTTGTTAATTTAAGGACTACTACGCCTCCACGACTTATGTCCCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAGCAGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCGCATCGTTTGCCACTGGCATTGACATGGATCCCCTGTTATTATAGTGAGGGAATAGGAGATGAAGCTTCAAGGATACGGATTAAAGATGGGGGTAGAATTCCTGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCATGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGCAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTGTCCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTATTCATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTGAAGAACAGCAACTTTTATTAGACAATCTATCAGATACTGTGCAGAGAATGTGTCAGAGTTTGAGGATAGTTTCGGATGCTGAATTACACGGGATAGAAGGTTCACAAGTGCAGTTTTCAAAGGAAGAAGGCTCTCATATGGCGCCGGATGGTGACCATGATTTGGTCCAGCCTATGTCCATGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGAGGGATCAAGAAAGCAGATTGAGAAAAAGAGAAGTCCAGTGAAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCTGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACCACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATTAACAAAGTTAATCGTTCGTTAAAGAAAATACGAACCGTGCTCGACTCGGTCCAAGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATGTCAGTAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTTCGGAAGAAATGTTCTGTAAAATATCCTGATCCTGCATCTGGTAGCAAAGATTCAAAGCCAATAGCCATGGGTGATGGTGGATTACGGCAGGAACCCTTTCCGGTTTCTATTTTGGAAAGTTTTTGGTGTGATATAGCATATCACAGTCCAAACTCCCTGGTTGCCGATGAGATGGAAACTTATCTGAATGGGGCTGACAAGCTCGGCGAGCATTACAATCCCACTACTTCAAGCATGACAGACTCGTCGAATGGCTCTTGCTCAATTTTGCGCTCCAGCTCATCTGCCTCTGGGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTGATAGTGGATCAAAAATTATTGTCAAAGCTGCCTACGGAGAAGATTTGATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAGCAAGATTCAAATTACAAATCGGGTCATTCCAACTCAAGTATCTCGACGATGAAGAGGAATGGGTGAGGATGGCAAATGACTCAGATTTGGAAGATTGCATAGAAATGTTGGATGATCTTGACACCCGTGCTGTGAAATTACTTGTTCACGACATGCCTAGTGGTTTGAGCAGCCTTGGCAGTAACGGTTGA 2667 0.4267 MEDQFFSEGEGIGYWTPPGAQFDGPSMIDNGIKNLVSEEMLDNLPDLMNFDNLAGWGNIPSVTDHNLDNEISSLASMQYSPPDAFSLVEQDNDPYFMTKDCGNYNATETSLGFDEKAVLQQLETQLGLSEDANDMNNINGSLRELSAADMGNCLVPRPFAWSLDERMLRAMDLFKESVGDGILTQVWAPMKHGNDFILSTSEQPYLLDHMLAGYRDVSRQFTFSAEDKPGSFPGLPGRVFNSQIPEWTSNVGYYNKSEYLRVEHAINHEVRGSIAVPIIDTLAEPPCCAILELVTTKEKTDFDRELEIVSSALQLVNLRTTTPPRLMSQCLSNNKRAALAEIIDVLRAVCHAHRLPLALTWIPCYYSEGIGDEASRIRIKDGGRIPGEKTVLCIEESACYINDIVVGGFVHACVEHYLEEGQGAAGKALQSNRPFFCPDVKAYNISEYPLVHHARKYKLNAAVAVRLRSIHTNDDDYIIEFFLPVNMNGSEEQQLLLDNLSDTVQRMCQSLRIVSDAELHGIEGSQVQFSKEEGSHMAPDGDHDLVQPMSMTNNETEAAHNQAMEGSRKQIEKKRSPVKKNVSLSVLQQYFSCSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIRTVLDSVQGVEGGLKFDPYKGGFMSVGSSNQEINAHKSSLFRKKCSVKYPDPASGSKDSKPIAMGDGGLRQEPFPVSILESFWCDIAYHSPNSLVADEMETYLNGADKLGEHYNPTTSSMTDSSNGSCSILRSSSSASGKFENRKHLKAKSPCVDSGSKIIVKAAYGEDLIRFKFDPAAGCLQLYEEVAARFKLQIGSFQLKYLDDEEEWVRMANDSDLEDCIEMLDDLDTRAVKLLVHDMPSGLSSLGSNG 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00525 888 SMART PB1_new 795 877 IPR000270 GO:0005515
Arst3g00525 888 Pfam PB1 domain 798 876 IPR000270 GO:0005515
Arst3g00525 888 ProSiteProfiles PB1 domain profile. 795 877 IPR000270 GO:0005515
Arst3g00525 888 Gene3D - 792 879 - -
Arst3g00525 888 SUPERFAMILY CAD & PB1 domains 789 879 - -
Arst3g00525 888 ProSiteProfiles RWP-RK domain profile. 561 649 IPR003035 -
Arst3g00525 888 Pfam RWP-RK domain 581 629 IPR003035 -
Arst3g00525 888 PANTHER PROTEIN NLP8 134 886 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00525 Arst-Chr3 3655415 3685059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00525 1 888 NLP Transcription Factor Family AT2G43500 46.130 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Arst3g00525 PB1 6.9e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00525 - - ahf:112736799 1612.43