Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00516 ATGCCGCGTCCGGCGAAATCAGTGAGGCCGTCGCACGAAGGAAGCGCCGCCGCCAGGGATTCCGACGAACCTTCCAACAACCTCTGGGTTGGGAATCTAGCGCCGGACGTAACCGACGCTGATCTGATGGACCTGTTCGCGCAGTACGGCGCCCTCGACAGTGTCACCTCTTACTCGGCGCGTAGCTACGCCTTCGTGTACTTCAAGCGCGTGGAGGACGCTAAGGCCGCGAAGAACGCTCTCCAAGGGTTCTCCCTCCGCGGCAATTCCTTGAAAATCGAGTTTGCTAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTGACAAAGGAAGAATTAGAAGCCGAATTTCGTAAATTTGGTAAAATTGAGGATTTTAAGTTTTTCAGGGACCGAAATACTGCATGTATTGAATTTTTCAATCTGGATGATGCCACTCAGGCAATGAAAGTCATGAATGGGAAACGTTTAGGTGGTGAACACATTCGTGTAGACTTCCTTCGATCACATTCTACAAGAAAAGATCAGTCGTCTGATTATGGACAGTTTCAAGGAAAAGGCTATGGGCATACTGATCCCTACACTGGACAAAAAAGACCTCTGCATTCACAACCCCCAATGGGAAGGAAAAGTGATAGTCAACCCAGTAATATTTTGTGGATTGGCTATCCTCCTGCCATTCAGATTGACGAGCAAATGCTCCACAATGCCATGATTTTATTTGGAGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAACTATTCATTAGTTGAATTTAGAAGTGTTGATGAAGCTCGGCGTGCAAAAGAGGGTCTTCAAGGACGCCTTTTTAATGACCCTCGAATAACAATTATGTATTCAAGCAATGAGTCTGGAAAAGATTACCCTGGCTTATATGCTGGTAGCGGTCCAAGAACTGACGCGTTCATGAATGACCATCCATTTCGACCATTGCAAATGGATTCATTTGGTCATAATCGTCCAGTGGTTCCAAATAATTTTCCTGGACAGTTGCCACCTGGAGGTATTCTTGGACCAAATGCACAAATGCGGCCGTTTGGTCCTCAAGGGAGTCTTGAACCTCTTATTTCTGGTCCCGAGTTTAATGAAATGGGCATGCACCACAAATTTCAGGATGGTAGTTCCAAGGGTAACATGGGTCCAAACAGGAAAAGGCCTTCTCCTCCTGCCCCAGGGATGCTTTCTCCTTCTCCTGCATCAGGTGTCAGGCTCCCTTCAAGATCAGCTTCCGGTGGATGGGATGTACTTGACATAAACCATATTCCAAGGGAGTCTAAACGTATGAGATTAGATGGTACTATGCCTGTTGATGATGTTCCGTATCCTTTAAGGAATGTAGATGATCGTGTGTTAGGTATGGACCAAACATATGGTCTTGATCCGGTGAGCACAAGGTTGGGAGCTGGAGTACTTGGTGCTGCACAACCTGATGCTGATCATATATGGCGTGGAATCATTGCAAAGGGAGGGACTCCGGTTTGTCAAGCTAGATGTGTCCCTATTGGGAAGGGGATAGCTGCTGAGCTTCCCGAGGTGGTTGATTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACACTATGCTGATGCTATTGGTTTTGACATTGTTTTCTTTTTGCCAGATAGCGAAGAGGATTTTGCTTCCTACACTGAATTCCTTCGCTATCTTAGTGCAAAAAACCGTGCGGGTGTTGCAAAATTTGCTGATAATACCACATTATTCTTGGTACCCCCTTCTGATTTCCTGACAAAAGTTTTGAAGGTCACTGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCTCCAGTTCCAGGTAATACTCCAATGCAGCAGTCTTCACATTTGCCTATACCATCAAGTCAGTATATGCAGCAGATTCCTCCTTCACAAGCTGAGTATGGATTGATTTCTGCAAAGGAAGAACCAGTTTTGCCAACAGATTATAACAGACTGTTGCATGATGAGTCTAAACTTCCTCCTAAACCAGTCTATCCGGCCACTAGTGGTCCCCCCTCACTTCAGGCTGGGCCTCCGGATTATCCTACTGGTTCCATGTCCCAAGCTGGTGTTGGATTAACTCCGGAGCTTATTGCAGCTTTAACTAATTTAATCCCTGGAACAACTCAATCATCGACAATTGATGGTGCCAAGTCAGCAGTAGGCTCCTCGACTGTGAGGCCTCCATTTCCCCCTGTTGCACCTAATGATGGTAACCAATCTCATTTATGGAAACAGGACCATCAAATTGTTGATCAGTCTGTTCATCCTCCTCAAAATTTGGGGAGTATGTATAACATTCACAATGCTCACTATCAGCCTTATCCACCACAATCTGCTCCTGGCTTCCCTAATCAAGTGGTCCCTGGCAGTTCGCATATTCAAGACACTGCTGCTGGTCTGCAGCAGCAGGGTGCTGTTTCGTCTAGACAGATGACTAATTACATGATACCTTCTCATAGTGGACAGGTAGCTGCACCCACCCATGTCAGTCAGCAGTATCAGGTTGAAGCCTCCCCTGGCAACCAGGGAGGATATGGAGTGCTTCAAGGGACAGATGCCTCTGGTTTATATAATTCTCAGGCTTTCCAACAGCCAAATAATTCAGTTGCTGCATCCACTCAAGTTCAGAGTGTTAATCCATCACAGCAACATGGTGTCCTGCCATATACACTGGACCAAGTAAATGCTGACCCTAACAGTCAGCAACATCCTCTCTATGGAGTTGGTCAGGGCTCAACAGAAGTCGAGGCCGATAAGAACCAAAGGTACCAATCAACGCTACAGTTTGCTGCCAATCTTCTCTTCCAAATACAGCAGCAGCAGCAACAGCAACCCCCTGGAGGACATGGATCAGGAATTCAATAA 2913 0.4638 MPRPAKSVRPSHEGSAAARDSDEPSNNLWVGNLAPDVTDADLMDLFAQYGALDSVTSYSARSYAFVYFKRVEDAKAAKNALQGFSLRGNSLKIEFARPAKPCKQLWVGGISPAVTKEELEAEFRKFGKIEDFKFFRDRNTACIEFFNLDDATQAMKVMNGKRLGGEHIRVDFLRSHSTRKDQSSDYGQFQGKGYGHTDPYTGQKRPLHSQPPMGRKSDSQPSNILWIGYPPAIQIDEQMLHNAMILFGEIERIKSFPSRNYSLVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNESGKDYPGLYAGSGPRTDAFMNDHPFRPLQMDSFGHNRPVVPNNFPGQLPPGGILGPNAQMRPFGPQGSLEPLISGPEFNEMGMHHKFQDGSSKGNMGPNRKRPSPPAPGMLSPSPASGVRLPSRSASGGWDVLDINHIPRESKRMRLDGTMPVDDVPYPLRNVDDRVLGMDQTYGLDPVSTRLGAGVLGAAQPDADHIWRGIIAKGGTPVCQARCVPIGKGIAAELPEVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLSAKNRAGVAKFADNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPGNTPMQQSSHLPIPSSQYMQQIPPSQAEYGLISAKEEPVLPTDYNRLLHDESKLPPKPVYPATSGPPSLQAGPPDYPTGSMSQAGVGLTPELIAALTNLIPGTTQSSTIDGAKSAVGSSTVRPPFPPVAPNDGNQSHLWKQDHQIVDQSVHPPQNLGSMYNIHNAHYQPYPPQSAPGFPNQVVPGSSHIQDTAAGLQQQGAVSSRQMTNYMIPSHSGQVAAPTHVSQQYQVEASPGNQGGYGVLQGTDASGLYNSQAFQQPNNSVAASTQVQSVNPSQQHGVLPYTLDQVNADPNSQQHPLYGVGQGSTEVEADKNQRYQSTLQFAANLLFQIQQQQQQQPPGGHGSGIQ 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00516 970 Gene3D - 100 210 IPR012677 -
Arst3g00516 970 FunFam Flowering time control protein FPA isoform A 101 215 - -
Arst3g00516 970 SUPERFAMILY RNA-binding domain, RBD 102 298 IPR035979 GO:0003676
Arst3g00516 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Arst3g00516 970 FunFam Flowering time control protein FPA 18 100 - -
Arst3g00516 970 CDD RRM_SF 105 171 - -
Arst3g00516 970 MobiDBLite consensus disorder prediction 670 704 - -
Arst3g00516 970 MobiDBLite consensus disorder prediction 1 27 - -
Arst3g00516 970 Gene3D - 7 99 IPR012677 -
Arst3g00516 970 SUPERFAMILY RNA-binding domain, RBD 10 100 IPR035979 GO:0003676
Arst3g00516 970 CDD SPOC_FPA-like 495 615 - -
Arst3g00516 970 CDD RRM_SF 28 94 - -
Arst3g00516 970 MobiDBLite consensus disorder prediction 179 221 - -
Arst3g00516 970 MobiDBLite consensus disorder prediction 679 693 - -
Arst3g00516 970 Pfam SPOC domain 490 607 IPR012921 -
Arst3g00516 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Arst3g00516 970 MobiDBLite consensus disorder prediction 380 423 - -
Arst3g00516 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 13 96 - -
Arst3g00516 970 SMART rrm1_1 104 171 IPR000504 GO:0003723
Arst3g00516 970 SMART rrm1_1 224 292 IPR000504 GO:0003723
Arst3g00516 970 SMART rrm1_1 27 94 IPR000504 GO:0003723
Arst3g00516 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Arst3g00516 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Arst3g00516 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 92 IPR000504 GO:0003723
Arst3g00516 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Arst3g00516 970 Gene3D - 213 303 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00516 Arst-Chr3 3556190 3565330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00516 27 301 Eukaryotic Initiation Factors Gene Family AT2G23350 22.559 2.97e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00516 - - gmx:100777570 1497.64