Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00477 ATGGACTCCGAGGAGGATATGCATGACGCCAATGACCTTGAATCCCTTGACGACGATTACTACAGTGGCGGCACCGAGGATGCTGCTTTGAATTACTACAGCGACTACGATGACGATGCCGATGATTACTTCGACGAAGCTGATGATTCCGAAAGGCTCGAGTCTCGCCGCCCTGAGCAAAATTTTACCATCTTGAAGGAATCAGATATCCAGCAAAGACAGGAGGAGGACATCACTAGGGTAGCTACAGTTCTTTCAATATCAAGAGTTGATGCCAGCATATTACTTCGCCATTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCGAGTCCGCAAAGCAGTTGGCTTGTTGGATAAGCCAATCATTGAGCATGCTGATGCTAGAGAGCTTACTTGCGGCATCTGTTTCGAAAATCATCCACGTGCTAAGATAGAGATGGCTTCTTGTGGTCATCCTTTCTGTCTCTCATGCTGGGAGGGATATATCAGCACATCCATCAGTGATGGCCCTGGATGTTTGATGCTGAGATGTCCTGATCCCGCATGTGGTGCTGCTGTTGGGCAAGATATGATTAATCGAGTAGCATCTGATGAAGATAAACAGAAGTATTCTCGCTACCTTCTTAGGTCGTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCGCCAGGTTGTGAATATGCAGTTACTTTTGATGCGGGTAGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATTGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTCTCAAAGTGGATTTTGAAGAACAGTGCAGAATCTGAAAACATGAACTGGATACTTGCCAACTCAAAGCCGTGCCCCAAATGCAAACGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACATGCACACCACCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACCGGTGGTTTTTATGCTTGCAATCGATATGAAGCAGCTAAACAGGAAGGAGTGTATGATGATGCTGAAAGAAGAAGAGAGATGGCAAAGAATTCATTGGAGAGATACACTCATTATTATGAGCGATGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTCCACCAGATGCAAACTGTTCATATTGAGAGGCTCAGTGACATTCAATGCCAGCCTGAGTCACAGCTAAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGAGTGCTGAAATGGACATATGCGTATGGGTTCTATTTACCAGAGCACGAGCATGCCAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTCGAGAGACTTCATCAATGTGCCGAAAAGGAACTACAACCGTTCCTCAATGCCGATGGGCCATCTAAAGAATTCAATGACTTTCGTACAAAACTAGCAGGATTGACTAGTGTGACCAAAAACTACTTCGAGAATTTAGTTAGGGCTTTGGAAAATGGTCTAGCTGATGTGGACACTAATGGGGCAGCCTCCAGCAAAGCGACAACCTCAAAAGGCGCGTCACCAAGCAGCAAGGGGAAAGGTGGAAGAGGAAGGGGAAACTTCCGAATCAGCATGTCCAGCAGAATGACCGATGATAATAGTCATTGGAGCTGCGACCAGTGTACCTACGCAAATGTCAGATCCACCACAGTATGCCAGATATGCAATCAACCACGCCGATGA 1776 0.4561 MDSEEDMHDANDLESLDDDYYSGGTEDAALNYYSDYDDDADDYFDEADDSERLESRRPEQNFTILKESDIQQRQEEDITRVATVLSISRVDASILLRHYNWSVSKVHDAWFADEDRVRKAVGLLDKPIIEHADARELTCGICFENHPRAKIEMASCGHPFCLSCWEGYISTSISDGPGCLMLRCPDPACGAAVGQDMINRVASDEDKQKYSRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIERLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLNADGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDTNGAASSKATTSKGASPSSKGKGGRGRGNFRISMSSRMTDDNSHWSCDQCTYANVRSTTVCQICNQPRR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00477 591 MobiDBLite consensus disorder prediction 36 59 - -
Arst3g00477 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Arst3g00477 591 Pfam Ariadne domain 357 536 IPR045840 -
Arst3g00477 591 MobiDBLite consensus disorder prediction 525 540 - -
Arst3g00477 591 MobiDBLite consensus disorder prediction 1 24 - -
Arst3g00477 591 CDD Rcat_RBR_ARI7-like 293 347 - -
Arst3g00477 591 SUPERFAMILY RING/U-box 289 337 - -
Arst3g00477 591 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Arst3g00477 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 222 IPR013083 -
Arst3g00477 591 ProSiteProfiles Zinc finger RanBP2 type profile. 563 591 IPR001876 -
Arst3g00477 591 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Arst3g00477 591 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Arst3g00477 591 SUPERFAMILY RING/U-box 209 277 - -
Arst3g00477 591 MobiDBLite consensus disorder prediction 525 566 - -
Arst3g00477 591 SUPERFAMILY RING/U-box 135 220 - -
Arst3g00477 591 SMART ibrneu5 283 344 IPR002867 GO:0008270
Arst3g00477 591 SMART ibrneu5 208 270 IPR002867 GO:0008270
Arst3g00477 591 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Arst3g00477 591 CDD BRcat_RBR_ANKIB1 215 279 - -
Arst3g00477 591 ProSitePatterns Zinc finger RanBP2-type signature. 567 586 IPR001876 -
Arst3g00477 591 SUPERFAMILY Ran binding protein zinc finger-like 562 590 IPR036443 -
Arst3g00477 591 CDD RING-HC_ARI6-like 136 197 - -
Arst3g00477 591 SMART zf_4 565 589 IPR001876 -
Arst3g00477 591 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Arst3g00477 591 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Arst3g00477 591 Gene3D - 266 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00477 Arst-Chr3 3352474 3358466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00477 17 590 ARIADNE family AT1G65430 70.447 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00477 K11968 - gmx:100810427 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01557 8 24557610 24562299 Arst3g00477 3 3352474 3358466 PCT