Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00438 ATGAGTTGGAATCCACACATGGAAATCCACCATTACAATAACATCAGCTATCCCTATAGTACAGCAGGAAGCTTTATTGAATATTTCGAAGGTCTCACATATGAACATGTCAATTTCATCTTTTCTGGTGCATCACATGCTCAGGAAAGTTCATACCCTTCAACTACAAGCTTTTATAAGTTTGGACTTTCTGAACCTGACAGCACTTCATACTATCGTTATAATCATGGTTATGATGTAAATCATCATCATGAACCACTGGTTGACGAATATAGGAGGCCTTTGGAAAACTCAACGACTGTCAATGAGCATACTGCAGCTGTAAATACAGAATGGGGAGAAGGGGTAAACAATACCACACGAGACAATTCTATTGAGTGTCCACGAAGACATCATAGTAATTCCAATGATTATCAGGTTGTTTGGCAAGACAGTATTGATCCTGACAACATGACCTACGAGGAACTACTTGAATTAGGTGAAGCTGTTGGAACCCAAAGCCGTGGTCTTACCCAAGAGCAGATTTCGATGCTTCCAGTTTCAAAGTACAAGTGTGGGTTCTTCTCAAGGAAGAAGTCGAAGGATGAGAGGTGTGTGATTTGCCAGATGGAGTATAAAAGAGGGGACAAGCGGATCACTTTGCCTTGTAAACATCTCTATCATGCTAGTTGCGGGGCCAGATGGCTTAGCATCAATAAGGCTTGTCCTATATGTTACAGGGAAGTGTTTTAG 732 0.4112 MSWNPHMEIHHYNNISYPYSTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSTTSFYKFGLSEPDSTSYYRYNHGYDVNHHHEPLVDEYRRPLENSTTVNEHTAAVNTEWGEGVNNTTRDNSIECPRRHHSNSNDYQVVWQDSIDPDNMTYEELLELGEAVGTQSRGLTQEQISMLPVSKYKCGFFSRKKSKDERCVICQMEYKRGDKRITLPCKHLYHASCGARWLSINKACPICYREVF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00438 243 SUPERFAMILY RING/U-box 189 242 - -
Arst3g00438 243 FunFam E3 ubiquitin ligase BIG BROTHER 160 243 - -
Arst3g00438 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 243 IPR013083 -
Arst3g00438 243 ProSiteProfiles Zinc finger RING-type profile. 198 238 IPR001841 -
Arst3g00438 243 Pfam Ring finger domain 197 238 IPR001841 -
Arst3g00438 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 243 IPR033276 GO:0004842|GO:0016567|GO:0046621
Arst3g00438 243 SMART ring_2 198 238 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00438 Arst-Chr3 3051254 3054970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00438 4 243 C3H Transcription Factor Family AT3G63530 42.683 6.35e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00438 K19045 - gmx:100805963 455.292