Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00429 ATGGCAGGGGTACCAACGACGCTGGAGGAAGTGCGAACGCTATGGATTGGAGACCTTCAGTACTGGGTCGACGAATCATACCTCACTCAGTGCTTCGCACACACTGGCGAAGTTGTTTCCATTAAGATCATCCGCAACAAGCTCACCGGCCACCCCGAAGGCTACGGCTTTGTTGAGTTCCTCTCCCACGCCGCCGCCGAGCGCGTTCTCCACTCCTACAACGGCACTCCCATGCCCGGAACCGACCACAACTTCCGCCTCAATTGGGCCTCCTTCGGCGTCGGCGACCGCAGGCCCGACGCCGGCCCCGACCACTCCATCTTCGTCGGCGACCTCGCCCCTGACGTCACTGATTACCTCCTCCAGGAGACTTTTCGCGCCAATTACCCTTCCGTTAGAGGCGCCAAGGTCGTTACGGACCCTAACACTGGTCGATCCAAGGGCTATGGTTTCGTTAAATTCGCCGATGAGAACGAGAGGAACCGCGCCATGTCGGAGATGAATGGAGTTTATTGCTCCACCAGGCCCATGCGTATTAGCGCTGCTACACCCAAGAAAACCACCGCCTTTCAGCAGCAGTATGCTCCAGCTAAAGCAATATATCCAGTCCCAGCGTATACTGCTCCAGTTCCGCCGGAATATGATATGAATAATACCACGGTTTATGTTGGTAATTTGGATCTTAATGTCACGGAGGAGGAGCTGAAGCAAGCCTTTATGCAATTTGGGGATATTGTGTCTATCAAAGTTCATGCTGGCAAAGGATTTGGTTTTGTTCAATTTGGGACTAGAGCGTCTGCTGAAGAAGCCATTCAGAAGATGCAGGGGAAGGTGGTAGGTCAACAAGTGGTTCAACTTTCTTGGGCTAGTACAACTAGACAGGATCCTGGTAGCTGGGGGCAACAGATGGATCCAAATCAATGGAGTGCCTACTATGGGTACGGCCAGGGTTATGAAGCCTATGCTTATGGAGCTACTCAAGATCCTTCATTGTATGCATATGGTGCATATGCTGGTTATGCGCAATACCCCCAACAGGTTGAAGGGGCTCAAGACATGTCGGTTATGTCTGTTCCTTCAGAGGAGTTGTATGATCCTCTTGCAATGCCTGATGTAGATAAGTTAAATGCTGCATATCTCTCAGTACATGGAAGTGCCATTTTAGGACGTCATCTGTGGCAAAAAACCTCGCCATTCGTACAACAAGCTTAG 1212 0.5132 MAGVPTTLEEVRTLWIGDLQYWVDESYLTQCFAHTGEVVSIKIIRNKLTGHPEGYGFVEFLSHAAAERVLHSYNGTPMPGTDHNFRLNWASFGVGDRRPDAGPDHSIFVGDLAPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKTTAFQQQYAPAKAIYPVPAYTAPVPPEYDMNNTTVYVGNLDLNVTEEELKQAFMQFGDIVSIKVHAGKGFGFVQFGTRASAEEAIQKMQGKVVGQQVVQLSWASTTRQDPGSWGQQMDPNQWSAYYGYGQGYEAYAYGATQDPSLYAYGAYAGYAQYPQQVEGAQDMSVMSVPSEELYDPLAMPDVDKLNAAYLSVHGSAILGRHLWQKTSPFVQQA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00429 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 291 IPR000504 GO:0003723
Arst3g00429 403 SUPERFAMILY RNA-binding domain, RBD 11 186 IPR035979 GO:0003676
Arst3g00429 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 284 IPR000504 GO:0003723
Arst3g00429 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 80 IPR000504 GO:0003723
Arst3g00429 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 172 IPR000504 GO:0003723
Arst3g00429 403 SUPERFAMILY RNA-binding domain, RBD 197 317 IPR035979 GO:0003676
Arst3g00429 403 CDD RRM2_SECp43_like 104 183 - -
Arst3g00429 403 Gene3D - 208 297 IPR012677 -
Arst3g00429 403 SMART rrm1_1 13 88 IPR000504 GO:0003723
Arst3g00429 403 SMART rrm1_1 106 180 IPR000504 GO:0003723
Arst3g00429 403 SMART rrm1_1 220 287 IPR000504 GO:0003723
Arst3g00429 403 FunFam Polyadenylate-binding protein RBP47B 11 91 - -
Arst3g00429 403 CDD RRM1_SECp43_like 13 93 - -
Arst3g00429 403 FunFam polyadenylate-binding protein RBP45 204 297 - -
Arst3g00429 403 FunFam Polyadenylate-binding protein RBP47B 93 195 - -
Arst3g00429 403 Gene3D - 11 91 IPR012677 -
Arst3g00429 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 92 IPR000504 GO:0003723
Arst3g00429 403 Gene3D - 94 195 IPR012677 -
Arst3g00429 403 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 295 - -
Arst3g00429 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00429 Arst-Chr3 2991187 2994842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00429 13 289 Eukaryotic Initiation Factors Gene Family AT1G71770 29.433 8.70e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00429 - - gmx:100794427 632.484