Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00397 ATGGAGAAGCAATCAGATGATGATCAAGATCATAGAAGAACAGCAGAAAAGGTTGTTGTGAGTAGTAGCAGTGATTATGGGAATGAAGTGCAAGCAGTGCATAATGTGAATCCAACAAGGTCATATGAATGCAACTTCTGCAAGAGAGGCTTCTCTAATGCACAAGCACTTGGAGGTCACATGAACCTTCATAGGAAGGACAAAGCAAAGATCAAAGAGCAGCAACAATTTTCTTCTTCTTCAAATCAAATTACTCATCATCAACAATTTTTATTGGAGGGGAATCTTGGTAGTAACAATGATAATAATAAAGAGCTTTTGAATGTGCCTCATCAACCAGTTATGGACGATGAAACCAATAATAATAATAATGTTGTGATGATGAGGCAGTTACCACTCTTTTCAGAATCATCATCATCACCTCATCATCATCTTCAACAGCAAGAGGATCAAATTTCTGGTCAACAAGGTCCCTCATCATCTTCAGAATTAGACCTTGAACTAAGATTAGGGCTTGAGCCTCCACAAGGATCTAATTCATCATCAGCTACAATAACGGGTACTAGAAAATTCTTTTGA 579 0.3765 MEKQSDDDQDHRRTAEKVVVSSSSDYGNEVQAVHNVNPTRSYECNFCKRGFSNAQALGGHMNLHRKDKAKIKEQQQFSSSSNQITHHQQFLLEGNLGSNNDNNKELLNVPHQPVMDDETNNNNNVVMMRQLPLFSESSSSPHHHLQQQEDQISGQQGPSSSSELDLELRLGLEPPQGSNSSSATITGTRKFF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00397 192 PANTHER OS07G0101800 PROTEIN 21 174 - -
Arst3g00397 192 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Arst3g00397 192 SUPERFAMILY beta-beta-alpha zinc fingers 39 69 IPR036236 -
Arst3g00397 192 MobiDBLite consensus disorder prediction 136 163 - -
Arst3g00397 192 MobiDBLite consensus disorder prediction 1 18 - -
Arst3g00397 192 Pfam C2H2-type zinc finger 42 66 - -
Arst3g00397 192 Gene3D Classic Zinc Finger 19 102 - -
Arst3g00397 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Arst3g00397 192 MobiDBLite consensus disorder prediction 1 25 - -
Arst3g00397 192 MobiDBLite consensus disorder prediction 136 192 - -
Arst3g00397 192 MobiDBLite consensus disorder prediction 174 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00397 Arst-Chr3 2825802 2826403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00397 16 176 C2H2 Transcription Factor Family AT5G06070 30.882 2.89e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst3g00397 zf-C2H2_6 2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00397 - - adu:107477079 365.54