Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00392 ATGAGGTCTTTGATTTTTAGGTATGATCTCATCAAGTGTATCAATGCTGGTCCAGCGCATAAGGTGTGGAAGCTCAAAGTACGTGTCATTAGACTTTGGACCGTTTCTCAATTTGCAAGATCTGGGATGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGAGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATTTTCGAGGGCTTACTCGCTGAGGGCAACGTGTACGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGGATCCATTTCAAGAGGGACACGATTGTGCGTCCGGTACAAGATTCTTCAGTTCCATTGAACGGATTTAATTTTGTTCCGTTCAAAACAATACAATCAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCTTCTAAGGGTAACTTGGTCGAATTCACACGGGACGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAGAGTAACGTTGTGGCAGTCTTTTGCTTTTGAATTGCTCAAATATCTAGAGGAACACCCGTCTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTATCTAACACAAACTACAATTCGAAACTGTTTATCAATGTTGAGTTTCCAGCTGCCAGGGATTTCTTTGCGAGGGTGAACAAATTGGATCCTGTTGATGGACAAGGCATAATGCCGCTGGTCTGTGGTCAACCTGTTTCAGATGAGGAGGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCAGATATAAAGGAGCATAATCAGGATGCTGTATTTGTTACAGCCGGGACGATTAAAGAAGTTGAGACTGAATTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTGAGGGAACTTGATAAAAAATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTCTATGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTGCTAAGGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTCATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTCTGGTCTCTGCCTTCCTTGATAAATACAATCCTGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACAACACTTCTAAGGCTTGTGAGAGTGAGCCAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATTGAAGAGATTGGAGAGGAGTCAGTTTCATCCAAATCTAAGAAAGGGAAGTGGGTTGTGGTGGAGGACTAA 1557 0.413 MRSLIFRYDLIKCINAGPAHKVWKLKVRVIRLWTVSQFARSGMKAPIEMVVLDEEGDTIQCTVKDIFVPIFEGLLAEGNVYVVTNFGVALNTIKFKPTRHEFRIHFKRDTIVRPVQDSSVPLNGFNFVPFKTIQSESKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLEGGQKLRVTLWQSFAFELLKYLEEHPSLTYVVILQMGKMKFYSGVMGVSNTNYNSKLFINVEFPAARDFFARVNKLDPVDGQGIMPLVCGQPVSDEEDFLRLSVYKTIADIKEHNQDAVFVTAGTIKEVETEFGWWYKGCKKCRRGLRELDKKYFCPNCIRDYGFYEPRYIIHIRVIDHTDAASFVLFDGEAAKFLGVSAKDLRQSCVTKGVEKNSCPEEIHKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLVSAFLDKYNPDTGLLSHENSELLSLSTGPYNTSKACESEPTPSPAVDEKHNSKILGAKKHIEEIGEESVSSKSKKGKWVVVED 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00392 518 PANTHER OS03G0429900 PROTEIN 19 441 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Arst3g00392 518 SUPERFAMILY Nucleic acid-binding proteins 18 117 IPR012340 -
Arst3g00392 518 SUPERFAMILY Nucleic acid-binding proteins 125 249 IPR012340 -
Arst3g00392 518 CDD RPA1_DBD_C 284 417 IPR047192 -
Arst3g00392 518 CDD RPA1_DBD_A_like 24 112 - -
Arst3g00392 518 Gene3D - 119 253 IPR012340 -
Arst3g00392 518 Gene3D - 273 442 IPR012340 -
Arst3g00392 518 Pfam Replication factor-A C terminal domain 296 418 IPR013955 -
Arst3g00392 518 MobiDBLite consensus disorder prediction 466 487 - -
Arst3g00392 518 CDD RPA1_DBD_B_like 145 245 - -
Arst3g00392 518 SUPERFAMILY Nucleic acid-binding proteins 281 430 IPR012340 -
Arst3g00392 518 Gene3D - 11 118 IPR012340 -
Arst3g00392 518 Pfam Domain of unknown function DUF223 48 138 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00392 Arst-Chr3 2808459 2812397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00392 14 426 Core DNA Replication Machinery Family AT5G08020 23.776 1.78e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00392 - - adu:107477146 1023.85