Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00376 ATGAACTTCGAAACGCAACCTGGAACGGCGTCGTTTTGGTGTTACAGCTGCGCAAGCTTCGTTCACATCATGGACGAAAGTGAAACCAACAACATCCTCTGCCCTAACTGCAATAGCGGTTTTGTCGAACAGATCCGACCCGACCCGTCTCCGGACCACTTTTTCAGCCCCTTCTCCGACGTCTCTGATTCCAGCCACCAAGGTTTCCGCCGTCGCCGCCGCAGTGCCGCGGGAAACCGCTCCCCTTTCAATCCTGTGATTGTTCTCCGTGGCCCCAGCGATGACGCCGATCGTGAAGGTGGTCCTGCCTTCGAGCTATACTACGACGACGGCGATGGAAGCGGTTTACGGCCTCTGCCGCCAGCTATTGCGGAGTTTCTGTTAGGTTCGGGATTTGACCGGCTTTTGGAGCAGTTCTCGCAGATCGAGACGAACGCGTTTGGGCGGCTGGAGAATCCACCCGCTTCTAAGGCGGCGATAGAGTCGATGCCGGCGGTGGAGATCGCGGAGGCGCACGTGCGTGCCGAAGCGCACTGCGCCGTGTGTAAGGAAGCATTTGAGCTACGGGCGGAGGCGCGTGAGCTTCCATGTAAGCACATATACCACACCGATTGCATCGTTCCGTGGCTTTCGATTCGGAATTCGTGCCCTGTGTGTCGACACGAGCTTCCTTCGGATCAGAATTCGTTGATGTCGGGTTCAATCGACGAGGAATCGATTGGATTAACGATTTGGAGGCTGCCGGGAGGGGGATTCGCCGTCGGTAGATTTTCTGGTGGCCGGAGAGCAGGTGAAAACCACCTTCCCGTCGTGTACACGGAGATGGACGGAGCACTGAACCCTAACGGAGCTCCGAGGAGGATTTCGCGTTCTGTGAGGAGCAATAGGGTTAGGGAAAGTCATGGAATTCGTAGGGTTTTTCGAAATTTCATGTCAATTTTTGGAAGATTGGGTTCTAGCAGGTCTAGATTTTTTGGTCCGGAACGAGTTTCGCTGAGATCGGTGTTCAATAGGAATTCGCGGAGGCGAACATGGAGATTTGAAGATTGA 1050 0.5476 MNFETQPGTASFWCYSCASFVHIMDESETNNILCPNCNSGFVEQIRPDPSPDHFFSPFSDVSDSSHQGFRRRRRSAAGNRSPFNPVIVLRGPSDDADREGGPAFELYYDDGDGSGLRPLPPAIAEFLLGSGFDRLLEQFSQIETNAFGRLENPPASKAAIESMPAVEIAEAHVRAEAHCAVCKEAFELRAEARELPCKHIYHTDCIVPWLSIRNSCPVCRHELPSDQNSLMSGSIDEESIGLTIWRLPGGGFAVGRFSGGRRAGENHLPVVYTEMDGALNPNGAPRRISRSVRSNRVRESHGIRRVFRNFMSIFGRLGSSRSRFFGPERVSLRSVFNRNSRRRTWRFED 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00376 349 SMART ring_2 179 219 IPR001841 -
Arst3g00376 349 FunFam E3 ubiquitin-protein ligase RING1-like 141 226 - -
Arst3g00376 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 224 - -
Arst3g00376 349 Pfam Ring finger domain 178 220 IPR001841 -
Arst3g00376 349 MobiDBLite consensus disorder prediction 61 98 - -
Arst3g00376 349 CDD RING-H2_RNF126-like 179 220 - -
Arst3g00376 349 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Arst3g00376 349 Pfam Protein of unknown function (DUF1117) 240 324 IPR010543 -
Arst3g00376 349 Pfam zinc-ribbon 11 45 IPR039525 GO:0061630
Arst3g00376 349 SUPERFAMILY RING/U-box 159 226 - -
Arst3g00376 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 226 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00376 Arst-Chr3 2745122 2746763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00376 118 233 C3H Transcription Factor Family AT5G01980 47.414 3.49e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00376 K11982 - gmx:100804867 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01677 8 25378056 25379548 Arst3g00376 3 2745122 2746763 PCT