LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g00346	CTCGCAGCAGACGCCCTCCACCGCTACTCTCCTCCTCCCTCCACGAGCTCGCGCGTTGAGTTCCACGCGCTGGCAACCCCTCCTGAAGCCGCCGCTGAAGAGGACAAGGTGCACGTGGCAGTTGGCAAGTCGGTGGGAAAAGGTGCCACTTTGCTTCAATGGGCTTTCTCAAACTTCACCAACCCACACATTCTTTTGCTTCATGTTCATCAACCTTCTCCTTTCATCCCTACACTATTAGGGAAGTTACCAGCATCTCAGGCTAATCCTGAAGTGGTCTCTGCTTTTAGAAGAGAGGAAAAAGAACAGGCCATGAGGCTTTTGGACAATTACCTGAGAATTTGCCGTGCAGCTAAGGTTAAGGCAAGCTTTATGATGACGGAAGCTGATCAGGTCCAGAAAGGGATTGTTGATTTGGTTGTAGGGCATAATATTAGGAGGCTTGTTATTGGAGCAATACCCGAAGGTTGGATGAAAGTCAAAAGGAATTCCAGGAAAGCAAATTATGCTGCCAAAAATGCACCCCCCTTCTGTAAAATATGGTTTATCTATAGAGGTAAACATATTTGGACAAGAGAAGCTTCTGAAAAACCTTGTTCTTTATCACCGTGTGAAACAATTGAAACAGAAGGCACTTTTGCTGCCGAATCAACTACATCCAGCGGTCCATTGCCCCAAAATTCTGCTGAGAGTTCTTCAGATACTCATTTAGAGGCTGAAGAAGAAAGAGTTAATAGTCAACTTGTTGAAGTCAAACAAGAAGCTGATGAAGCAGCAGATGAGTCTTTTGTTGAGCTATTGAAGTTGGAAGCTGAAGCCACTGAGGCCATAAGGAAGGTCAATTTGTTTGAATCTGCTCATGCACAGGAAGTAAAGCTCAGACAAGAGGCAGAGGATGAGTTGAGAACCACAGTAAAGGATCAACAAAAGCTCTTGGATGAGAATGAAGAAATTGGTAGTGAGTTACAAAGAACCATGAGAAGTATTGCCATCATAAACAGTTGTGTGCAGGAAACAGACCATAGGCGAGATGCAGCTGAAGATGAACTATCACTAATTCAAGCATCCATCTCCACACTCTGGCACGAAAAACAGCAGATCAGGCGACAGAAAATGGAAGCCATCCGCTGGCTGGACCGGTGGAAAAGCCGTGGGCAAGTTGGAGTTGCTCATTGTAATGGAGTTGTAGGATTTGCTGAGGAGCTACCTGAGATAGCAGAATTTTCATTATTGGATATTCAAAATGCCACATGCAATTTTTCTGAAAGCTTTAAAATTAAGGAGGGTGGATATGGCGCTATTTATAAGGGAGAAATGTTGGGTAGGACAGTTGCTATAAGAAAGCTCCATTCTCACAATTTGCAAGCACCTTCACAGTTTCACCAAGAGGTTCAAGTTCTTGGTAGTTTTCAGCACCCTCATCTGTTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCACTTGTATATGAGTACTTGCCCAATGGAAGTATTCAAGACAGCCTTCTAAGAAGGAGCAACATTTCCCCTTTAACATGGAATATCCGAACACGATGGATTGCTGAAATTGCTAGTGCTATCTGCTTTTTACATTCTTCCAAACCGGAAACTATTATTCATGGTGATCTGAATCTTGACATCATACTTCTTGATTCTGCACTTTCATTTTTCCTGTGCCCAATCCTTCAGGAAATAATGCACGATCCTCAAGTTGCAGCAGATGGATTTACTTATGAAAGGGATGCCATAACCGAATGGCTGGAAAATGGACATGAAACTTCTCCCATGACCAATCTGAAACTGAATCATCTGTATCTTACTCCCAATCATGCACTTCGACTTGCTATCCAAGAATGGCTTTGCAAACCCTGA	1872	0.437	MELLHPLPPHRHDPPLAADALHRYSPPPSTSSRVEFHALATPPEAAAEEDKVHVAVGKSVGKGATLLQWAFSNFTNPHILLLHVHQPSPFIPTLLGKLPASQANPEVVSAFRREEKEQAMRLLDNYLRICRAAKVKASFMMTEADQVQKGIVDLVVGHNIRRLVIGAIPEGWMKVKRNSRKANYAAKNAPPFCKIWFIYRGKHIWTREASEKPCSLSPCETIETEGTFAAESTTSSGPLPQNSAESSSDTHLEAEEERVNSQLVEVKQEADEAADESFVELLKLEAEATEAIRKVNLFESAHAQEVKLRQEAEDELRTTVKDQQKLLDENEEIGSELQRTMRSIAIINSCVQETDHRRDAAEDELSLIQASISTLWHEKQQIRRQKMEAIRWLDRWKSRGQVGVAHCNGVVGFAEELPEIAEFSLLDIQNATCNFSESFKIKEGGYGAIYKGEMLGRTVAIRKLHSHNLQAPSQFHQEVQVLGSFQHPHLLTLLGVCPEAWSLVYEYLPNGSIQDSLLRRSNISPLTWNIRTRWIAEIASAICFLHSSKPETIIHGDLNLDIILLDSALSCKICEFGFSRLVTEDSLYLPSFGLETEPRGSFTYTDPEFQRTGLTPKSDIYSFGLIILQLLTGRTPVGLVGEVQKAVTYGRLSSILDSSVGEWPLAVATRLADLGLQCCQQYSRDRPELTPSLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYERDAITEWLENGHETSPMTNLKLNHLYLTPNHALRLAIQEWLCKP	778

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g00346	778	MobiDBLite	consensus disorder prediction	229	260	-	-
	Arst3g00346	778	SUPERFAMILY	Protein kinase-like (PK-like)	419	690	IPR011009	-
	Arst3g00346	778	SUPERFAMILY	RING/U-box	705	777	-	-
	Arst3g00346	778	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	708	777	IPR013083	-
	Arst3g00346	778	MobiDBLite	consensus disorder prediction	229	248	-	-
	Arst3g00346	778	Gene3D	Phosphorylase Kinase; domain 1	412	507	-	-
	Arst3g00346	778	Gene3D	HUPs	45	174	IPR014729	-
	Arst3g00346	778	CDD	STK_N	51	201	-	-
	Arst3g00346	778	PANTHER	OS02G0152300 PROTEIN	52	773	-	-
	Arst3g00346	778	Gene3D	Transferase(Phosphotransferase) domain 1	508	707	-	-
	Arst3g00346	778	ProSiteProfiles	U-box domain profile.	707	778	IPR003613	GO:0004842\|GO:0016567
	Arst3g00346	778	ProSiteProfiles	Protein kinase domain profile.	435	700	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst3g00346	778	Coils	Coil	309	329	-	-
	Arst3g00346	778	SMART	Ubox_2	711	774	IPR003613	GO:0004842\|GO:0016567
	Arst3g00346	778	Coils	Coil	252	276	-	-
	Arst3g00346	778	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	64	172	-	-
	Arst3g00346	778	CDD	RING-Ubox_WDSUB1-like	709	764	-	-
	Arst3g00346	778	Pfam	Protein tyrosine and serine/threonine kinase	440	690	IPR001245	GO:0004672\|GO:0006468
	Arst3g00346	778	Pfam	U-box domain	708	777	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g00346	Arst-Chr3	2531806	2536227	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g00346	49	775	U-box Gene Family	AT2G45910	36.273	1.09e-162	490

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Arst3g00346		PK_Tyr_Ser-Thr	3e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g00346	-		-	aip:107629106	1251.11