Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00343 ATGGGGGAGGGGCAGCAAGACGATGGAGTAGTCGACATCTTGATTGACTTGGTCAACGAGATTCGTTCCATCTCTGATTTCAGGCCTATGCTCAAGAAGCACTTTTCCAACTTAGCCAGAAGGCTCAATCTTCTCACCCCTTTCTTCCAAGAAATCAGCGACTTCAACCCTGCTCTTCTCCCTCCCAACACTTTCAATGCCCTGCTGAGCTTAGGACCAAATTATGACTAAGTTCTATGAGGTCTCGGCTAGGTTGGAGCAGTCTTTGGCGGCGGTTTCATGTGATCAACTCGACATTTCAGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTGCTCAGTTCAGAAGAGCAAAAGGGAGGGTTGATGAACCTGATACCAAGTTGTATGAGGATGTGTTGTCCCTCTATAACAATAACACTGATGTAGCTACCAATCCAGATGTTTTTCGGCAGTTAGCAGAGAAGTTGGAATTGATGGGAATAACTGATCTCACACAAGAGTCACTTGCCCTGCACGAGATGGTGGCCGTAAGTGGTGGCGATCCGGCCGGACGCATTGAGAAGATGTCCATGCTATTGAAGAAGATAAAAGATTATGTTCAAACTGAAAATCTAGTTGTGTATGATACTGTAGGAGGAAAGGGCCATTCTTCAAAAACCAGCAAACAAGTCTCAAATGAAAGGAATCATCAGACGCCTGTTATCCCTGATGATTTTCGATGTCCTGTTTCTCTTGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGACCGTTCTTCTATTGAGAAGTGGTTAGAAGCAGGGCATGGTACATGCCCAAAAACACAGCAGAGCCTCACTAGTACCGTCCTCACACCCAACTATGTCTTGCGAAGCCTCATAGAACAATGGTGCGAAGCAAATGGCATGGAACCACCGAGACGACCAAGCAATTCCGAACCTAGTAAATCAGTGTCGGCTTATGCCCCGGCCGAACGAAGCAAGATTGAAACTCTTCTCCAAAGGCTGACTTGTGGCAGTCCAGAAGAGCGAAGAACAGCTGCAGGGGAGATCCGGCTTCTTGCAAAGCGCAATGCAGATAACCGTGTGGCCATTGCAGAAGCCGGTGCAATACCTCTCCTTGTTGGTCTCCTCTCTGTGCCTGATTCCCGCACTCAAGAGAATGCTGTTACCGCACTTCTGAATCTTTCTATATATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCAATTCCAGGCATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGAGAAAATGCAGCAGCAACACTTTTCAGCCTATCAGTTATTGATGAAAACAAGGTTACAATTGGTGCTTCAGGAGCCATACCTCCATTAGTAACACTTCTAAGTGAGGGTACTCAGAGGGGTAAGAAAGATGCTGCAACAGCACTCTTTAATCTATGCATTTATCAAGGGAACAAGGGAAAGGCAATCAGGGCCGGTGCCATTCCCACATTGATGAAACTTGTAACAGAACCCAATGGAAGCATGGTGGATGAAGCGTTGGCCATTTTGGCAATATTGTCTAGCCATCCTGATGGAAAGGCTGCCATTGGTGCTGCAGAGGCAGTGCCCTTTTTGGTACAGTTTATTGCAAATGGTTCACCCAGGAACAAAGAAAATGCGGCTGCTGTCTTGGTTCATCTTTCTTCTGGAGATCAACAATATCTGGCTCAGGCCCGAGAGCTCGGCGTGATGGATCCTTTGTTGGATTTGGCTCAAAATGGCACAGATAGAGGAAAAAGGAAGGCAGCACAATTGCTAGAACGCATGAGCAGGTTCCTTGAGCAGCAGAGTCAAAATGAACTGAACCATGTTGCACATACCAGCATTGATAATACCTAA 1891 0.4617 MGEGQQDDGVVDILIDLVNEIRSISDFRPMLKKHFSNLARRLNLLTPFFQEISDFNPALLPPNTFNALLSLRDALQAARDFLSFAANCSKIFMVLERDQIMTKFYEVSARLEQSLAAVSCDQLDISDEVKEQVELVLAQFRRAKGRVDEPDTKLYEDVLSLYNNNTDVATNPDVFRQLAEKLELMGITDLTQESLALHEMVAVSGGDPAGRIEKMSMLLKKIKDYVQTENLVVYDTVGGKGHSSKTSKQVSNERNHQTPVIPDDFRCPVSLELMKDPVIVSTGQTYDRSSIEKWLEAGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGMEPPRRPSNSEPSKSVSAYAPAERSKIETLLQRLTCGSPEERRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAIPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAIRAGAIPTLMKLVTEPNGSMVDEALAILAILSSHPDGKAAIGAAEAVPFLVQFIANGSPRNKENAAAVLVHLSSGDQQYLAQARELGVMDPLLDLAQNGTDRGKRKAAQLLERMSRFLEQQSQNELNHVAHTSIDNT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00343 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 334 IPR013083 -
Arst3g00343 655 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Arst3g00343 655 FunFam RING-type E3 ubiquitin transferase 342 638 - -
Arst3g00343 655 Pfam U-box domain 261 331 IPR003613 GO:0004842|GO:0016567
Arst3g00343 655 FunFam RING-type E3 ubiquitin transferase 7 121 - -
Arst3g00343 655 Gene3D - 9 121 IPR036537 GO:0007166
Arst3g00343 655 PANTHER U BOX DOMAIN-CONTAINING 30 634 - -
Arst3g00343 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 481 523 IPR000225 GO:0005515
Arst3g00343 655 Pfam Armadillo/beta-catenin-like repeat 388 427 IPR000225 GO:0005515
Arst3g00343 655 Pfam Armadillo/beta-catenin-like repeat 471 509 IPR000225 GO:0005515
Arst3g00343 655 SUPERFAMILY ARM repeat 359 638 IPR016024 -
Arst3g00343 655 MobiDBLite consensus disorder prediction 241 262 - -
Arst3g00343 655 SUPERFAMILY RING/U-box 249 336 - -
Arst3g00343 655 CDD MLKL_NTD 9 141 - -
Arst3g00343 655 CDD RING-Ubox_PUB 262 314 IPR045210 -
Arst3g00343 655 MobiDBLite consensus disorder prediction 241 258 - -
Arst3g00343 655 Pfam Neurochondrin 521 640 IPR008709 -
Arst3g00343 655 MobiDBLite consensus disorder prediction 331 353 - -
Arst3g00343 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 399 441 IPR000225 GO:0005515
Arst3g00343 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Arst3g00343 655 SMART arm_5 470 510 IPR000225 GO:0005515
Arst3g00343 655 SMART arm_5 429 469 IPR000225 GO:0005515
Arst3g00343 655 SMART arm_5 511 551 IPR000225 GO:0005515
Arst3g00343 655 SMART arm_5 552 592 IPR000225 GO:0005515
Arst3g00343 655 SMART arm_5 594 634 IPR000225 GO:0005515
Arst3g00343 655 SMART arm_5 388 428 IPR000225 GO:0005515
Arst3g00343 655 FunFam RING-type E3 ubiquitin transferase 260 334 - -
Arst3g00343 655 Gene3D - 345 653 IPR011989 -
Arst3g00343 655 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00343 Arst-Chr3 2505456 2508658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00343 14 646 U-box Gene Family AT3G46510 67.296 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00343 - - gmx:100812160 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00343 3 2505456 2508658 Arst3g00343 3 2505456 2508658 ECH