Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00321 ATGCGCCTAAACCCTGCACTTACCAACGCCACCAATCTTCTATTCAAGAACTCTTACCCTTTTTCTCCCTTGCTATTCCCGCGCCATTCATCTACCAATTTGTTAGTCACAGGACTATCCTATGATACGAACGAAACTGTTCTAAGAGATGCATTTGAACAACACGGCGAATTAATCGAAGTTAAAGTGATATGTGATCATGTCACTGGCAAATCAAAAGGCTATGGATTCGTTCGCTTCACTACTGAAACTTCAGCTGCTACAGGTCGCAAAGAAATGCATAAAAAGATTATAGATGGGAGACGCATTCGAGTGTGTTATGCTCACAAACAAGCCTAG 339 0.4189 MRLNPALTNATNLLFKNSYPFSPLLFPRHSSTNLLVTGLSYDTNETVLRDAFEQHGELIEVKVICDHVTGKSKGYGFVRFTTETSAATGRKEMHKKIIDGRRIRVCYAHKQA 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00321 112 SMART rrm1_1 33 106 IPR000504 GO:0003723
Arst3g00321 112 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 22 111 - -
Arst3g00321 112 SUPERFAMILY RNA-binding domain, RBD 18 110 IPR035979 GO:0003676
Arst3g00321 112 Gene3D - 21 112 IPR012677 -
Arst3g00321 112 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 111 - -
Arst3g00321 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Arst3g00321 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00321 Arst-Chr3 2369925 2371113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00321 33 106 C2H2 Transcription Factor Family AT2G19380 41.892 1.35e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00321 K13195 - gmx:100306540 138.272