Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00249 ATGGAGGGAAGTGACACTAACAACACCACCTACTCTAACTCTACTTCTACTTCTTCTGGTGATCCTCCTCCTCCGGCGGCGGCAACGGTGGCGGTTGTAATGAGCCCTTGTGCAGCATGCAAGATCTTGAGGCGAAGATGCACGGAGAAATGCATGCTTGCGCCATATTTCCCTCCCACCGAGCCTACCAAGTTCACCATTGCTCATAGGGTCTTTGGCGCTAGCAACATCGTCAAGTTCTTGCAGGAGATTCCGGAATCTCAAAGAGCTGATGCAGTGAGTAGCATGGTGTATGAGGCAAGTGCAAGAATAAGGGACCCAGTTTATGGTTGTGCAGGTGCAATTTGCCAGCTTCAGAAGCAAGTCAATGAGCTTAGAGCACAATTGGCAAAAACACAAGCTGAGGTTGCAACCATGCAATTTCAACAAGCCAACCTTGTTGCCCTAATTTACATGGAAATGGCACAACAACAAAGTTCCCAACAACAACAACAAGAGTTTGAATCATCACCTCAGCAATCATCAATGGAAGATTTCAATGTTCCAAGCCCTCACTATCAACAAAGTAACATCAACTACTTTGAGGATAACCCTAGCCTCAATTCATTGTGGGAGCCGCTCTGGACATGA 630 0.4683 MEGSDTNNTTYSNSTSTSSGDPPPPAAATVAVVMSPCAACKILRRRCTEKCMLAPYFPPTEPTKFTIAHRVFGASNIVKFLQEIPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELRAQLAKTQAEVATMQFQQANLVALIYMEMAQQQSSQQQQQEFESSPQQSSMEDFNVPSPHYQQSNINYFEDNPSLNSLWEPLWT 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00249 209 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Arst3g00249 209 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Arst3g00249 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 174 - -
Arst3g00249 209 MobiDBLite consensus disorder prediction 1 23 - -
Arst3g00249 209 MobiDBLite consensus disorder prediction 160 182 - -
Arst3g00249 209 MobiDBLite consensus disorder prediction 1 25 - -
Arst3g00249 209 Coils Coil 115 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00249 Arst-Chr3 1805671 1807878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00249 32 209 AS2 family AT1G07900 61.878 1.29e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Arst3g00249 LOB 3.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00249 - - tcc:18590099 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00249 3 1805671 1807878 Arst3g00249 3 1805671 1807878 ECH
Arst8g01819 8 26562417 26564116 Arst3g00249 3 1805671 1807878 PCT