Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00234 ATGATGTCTGAAGAACCCTTTTCTTCTGTTCTTCCTCCCAACACCACCATCACAAGCACCTTGGTTCATCTCCAAGACCCAACCTCAAACCCTAGTAGCAATAACTCAAAACCTAATTCAAATCAACCCACCAAGAAGAGGAGAAATCTTCCTGGAACACCAGATCCGGATGCAGAAGTGATAGCTATGTCACCAAAGTCGTTGATGGCGACGAACCGTTTCGTATGCGAAATCTGCAACAAGGGTTTCCAGAGGGACCAGAACTTGCAGCTGCATAGGAGAGGACACAACCTTCCATGGAAGCTAAAGCAGAGAAACAAGGAAGAACAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGTCTTGCGTGCACCATGACCCCTGTAGAGCACTGGGGGACCTCACAGGTATCAAGAAACACTACAGCAGGAAGCATGGCGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATACGCTGTTCATTCTGATTGGAAGGCCCATGCCAAGATCTGCGGGACTCGGGAGTACAAGTGCGACTGCGGCACCATTTTCTCCCGGAAGGACAGCTTCATAACACACAGAGCATTTTGTGATGCATTGGCTGAAGAAGGTGCAAGAATAAACTCAGTTCCAACAACTTTGAGCAACTTGATGGGTAGAAGAGATCATCATCATCACCATCATCAATTAGCAACAAGTAGAATCATCCCTCGTCATCACATTCTTCCAAGTGCTGGATTTCACTCGGAATTTGGTGGTGGTGGTGGTAGTGGTGGTGGTTATTATTCAGATCAGAAGCTGATGATGATGAGGAACAATAATATTCAGATTCCACTATGGTTAGACCAGGGCAATAGCAATAACAATCATAATCATGTTAGTGGCATTTCATCAAACACTAGTAGTGCATGCACCAATGGCAACACTATCATTATGCCTCATCATGATGTAGTGAACAACTCTATGTTTGGATCACAACAATGGCAGCAGAATCTAGAAGCATCATCATCATCACTCACAAACAATAACAACAATGCCAACGTGGCTATGATGATGCCACCACCACATGCAGGATTAAAGCAAGAACAAGATGAGATGTTCTATTTTGGTGCTAGTAATTACCATCATCATCACATAATGTTACAAAAAGCATCACAAATTGGAGGAGGTGATGAGTTGGTGAATTTGGAAGGTAGCATCAGTAGTATTCCTCCATTAATATTGAATCCAACAAGGAGGCCATCAAAGAATGATAATAAAGATGAAGATGATGAACTGGGTTTAACAAGGGATTTTCTTGGAGTTGGAGAAGATGAATCAACAATGAGCAACACTAGGCCATTGATGTTACAGCAACACCTAGCTGACTTCACAGCCATGGATATGCATCATCAAACCCACTACAGTAGTAGTAGTGGACATTACTACTTACAGGTAAATGATGAAGAAATAGATGGATGA 1467 0.4308 MMSEEPFSSVLPPNTTITSTLVHLQDPTSNPSSNNSKPNSNQPTKKRRNLPGTPDPDAEVIAMSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKEEQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVHSDWKAHAKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEEGARINSVPTTLSNLMGRRDHHHHHHQLATSRIIPRHHILPSAGFHSEFGGGGGSGGGYYSDQKLMMMRNNNIQIPLWLDQGNSNNNHNHVSGISSNTSSACTNGNTIIMPHHDVVNNSMFGSQQWQQNLEASSSSLTNNNNNANVAMMMPPPHAGLKQEQDEMFYFGASNYHHHHIMLQKASQIGGGDELVNLEGSISSIPPLILNPTRRPSKNDNKDEDDELGLTRDFLGVGEDESTMSNTRPLMLQQHLADFTAMDMHHQTHYSSSSGHYYLQVNDEEIDG 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00234 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Arst3g00234 488 Gene3D Classic Zinc Finger 53 126 - -
Arst3g00234 488 MobiDBLite consensus disorder prediction 8 48 - -
Arst3g00234 488 FunFam protein indeterminate-domain 12-like 53 122 - -
Arst3g00234 488 MobiDBLite consensus disorder prediction 1 59 - -
Arst3g00234 488 MobiDBLite consensus disorder prediction 416 430 - -
Arst3g00234 488 MobiDBLite consensus disorder prediction 410 430 - -
Arst3g00234 488 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Arst3g00234 488 SMART c2h2final6 151 171 IPR013087 -
Arst3g00234 488 SMART c2h2final6 74 96 IPR013087 -
Arst3g00234 488 SMART c2h2final6 116 146 IPR013087 -
Arst3g00234 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 453 IPR031140 -
Arst3g00234 488 Gene3D Classic Zinc Finger 130 206 - -
Arst3g00234 488 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Arst3g00234 488 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00234 Arst-Chr3 1625404 1628406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00234 44 235 IDZ Gene Family AT3G45260 75.124 1.24e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst3g00234 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00234 K25870 - ahf:112736536 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01832 8 26721103 26722707 Arst3g00234 3 1625404 1628406 PCT