Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00201 ATGAAGGATTGTTGGTTTTTGGACAACAATTTGAATGGGGTATCGGATGAAGTTTTTGATGTGGTGGGGTTTTTTGATTTCCCAATAGAAGATGTGGAAGATGATGCTGTGGAGGAGGATTGGGGTGCTCAGTTTAAACAACTTGAAGAGCCATCTCTTGGTGTGTTTTCGGTATCACCATCCGGGCTGAGTGATAAAACTAAGAATGAGAATCCGAAACTTGGGAGGAGTATCTCTACTCCTGTGGCCGATCCTGCTCGGCCTACATACGGCAATACTATTCGGAACCAGAATGTTTCTTTTAATGGGAAAAGGGTGCCCAAGTTCCAAACCTACAGCCCTGTGTCTGTCTTTGAAAGCAGTAGTTCCTCCTCGGTCGAGAACTCCAACTTTGATCTACCTGTCATCCCGGTAAAGCGTCCTCGAGGCAAACGCCGGCCTCTCTCAAGCTTCAGCTTGCTATTATCTGTTCCATTCGTCTCTAACTCCCCAAAAGATCATACTGAGAAGAAGGGATCTGCATTGCAAGGGTCAGTTACCCACCGAAAATGCATGCATTGTGAGGTGACATCGACGCCGCAGTGGAGAGAAGGACCCATGGGTCCAAAGACACTTTGCAATGCTTGTGGGGTTCGGTATAGGTCCGGCCGGCTCTTCCCTGAATACCGGCCTGCAGCTAGCCCTACGTTTGTACCATCATTGCACTCGAACTCTCACCGGAAGGTCATCGAAATGAGAAGCCGAACTGCGACAGAGACTCTTAAGGGTTCTTCTATGTTGGACAAAGTGTTGTGA 795 0.4805 MKDCWFLDNNLNGVSDEVFDVVGFFDFPIEDVEDDAVEEDWGAQFKQLEEPSLGVFSVSPSGLSDKTKNENPKLGRSISTPVADPARPTYGNTIRNQNVSFNGKRVPKFQTYSPVSVFESSSSSSVENSNFDLPVIPVKRPRGKRRPLSSFSLLLSVPFVSNSPKDHTEKKGSALQGSVTHRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHRKVIEMRSRTATETLKGSSMLDKVL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00201 264 PANTHER GATA TRANSCRIPTION FACTOR 33 248 - -
Arst3g00201 264 Pfam GATA zinc finger 184 217 IPR000679 GO:0006355|GO:0043565
Arst3g00201 264 Gene3D - 177 228 IPR013088 GO:0006355|GO:0008270
Arst3g00201 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 241 - -
Arst3g00201 264 ProSiteProfiles GATA-type zinc finger domain profile. 178 214 IPR000679 GO:0006355|GO:0043565
Arst3g00201 264 SMART GATA_3 178 228 IPR000679 GO:0006355|GO:0043565
Arst3g00201 264 ProSitePatterns GATA-type zinc finger domain. 184 209 IPR000679 GO:0006355|GO:0043565
Arst3g00201 264 MobiDBLite consensus disorder prediction 59 97 - -
Arst3g00201 264 CDD ZnF_GATA 183 230 IPR000679 GO:0006355|GO:0043565
Arst3g00201 264 FunFam GATA transcription factor 175 259 - -
Arst3g00201 264 MobiDBLite consensus disorder prediction 59 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00201 Arst-Chr3 1398090 1401703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00201 8 248 C2C2-Gata Transcription Factor Family AT1G08000 39.785 7.58e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst3g00201 GATA 5.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00201 - - gmx:100813303 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01868 8 27021013 27025197 Arst3g00201 3 1398090 1401703 PCT