Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00200 ATGAAGGATTGTTGGTTTTTGGACAACAATTTGAATGGGGTATCGGATGAAGTTTTTGATGTGGTGGGGTTTTTTGATTTCCCAATAGAAGATGTGGAAGATGATGCTGTGGAGGAGGATTGGGGTGCTCAGTTTAAACAACTTGAAGAGCCATCTCTTGGTGTGTTTTCGGTATCACCATCCGGGCTGAGTGATAAAACTAAGAATGAGAATCCGAAACTTGGGAGGAGTATCTCTACTCCTGTGGCCGATCCTGCTCGGCCTACATACGGCAATACTATTCGGAACCAGAATGTTTCTTTTAATGGGAAAAGGGTGCCCAAGTTCCAAACCTACAGCCCTGTGTCTGTCTTTGAAAGCAGTAGTTCCTCCTCGGTCGAGAACTCCAACTTTGATCTACCTGTCATCCCGGTAAAGCGTCCTCGAGGCAAACGCCGGCCTCTCTCAAGCTTCAGCTTGCTATTATCTGTTCCATTCGTCTCTAACTCCCCAAAAGGTGAGGCAAATGATTTCTCTGGATCAAATTTACAAACACAAGCTGATGGTAAATTAATAAGCAGTCTCAAAAAGAAGCAGAGGAGTAAGGATCTACCTTTGCTTTCAGATCATACTGAGAAGAAGGGATCTGCATTGCAAGGGTCAGTTACCCACCGAAAATGCATGCATTGTGAGGTGACATCGACGCCGCAGTGGAGAGAAGGACCCATGGGTCCAAAGACACTTTGCAATGCTTGTGGGGTTCGGTATAGGTCCGGCCGGCTCTTCCCTGAATACCGGCCTGCAGCTAGCCCTACGTTTGTACCATCATTGCACTCGAACTCTCACCGGAAGGTCATCGAAATGAGAAGCCGAACTGCGACAGAGACTCTTAAGGGTTCTTCTATGTTGGACAAAGTGTTGTGA 903 0.4673 MKDCWFLDNNLNGVSDEVFDVVGFFDFPIEDVEDDAVEEDWGAQFKQLEEPSLGVFSVSPSGLSDKTKNENPKLGRSISTPVADPARPTYGNTIRNQNVSFNGKRVPKFQTYSPVSVFESSSSSSVENSNFDLPVIPVKRPRGKRRPLSSFSLLLSVPFVSNSPKGEANDFSGSNLQTQADGKLISSLKKKQRSKDLPLLSDHTEKKGSALQGSVTHRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHRKVIEMRSRTATETLKGSSMLDKVL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00200 300 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Arst3g00200 300 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Arst3g00200 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 277 - -
Arst3g00200 300 Gene3D - 213 264 IPR013088 GO:0006355|GO:0008270
Arst3g00200 300 MobiDBLite consensus disorder prediction 59 76 - -
Arst3g00200 300 FunFam GATA transcription factor 211 295 - -
Arst3g00200 300 PANTHER GATA TRANSCRIPTION FACTOR 33 284 - -
Arst3g00200 300 SMART GATA_3 214 264 IPR000679 GO:0006355|GO:0043565
Arst3g00200 300 CDD ZnF_GATA 219 266 IPR000679 GO:0006355|GO:0043565
Arst3g00200 300 MobiDBLite consensus disorder prediction 59 97 - -
Arst3g00200 300 MobiDBLite consensus disorder prediction 187 203 - -
Arst3g00200 300 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Arst3g00200 300 MobiDBLite consensus disorder prediction 187 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00200 Arst-Chr3 1398090 1401703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00200 8 284 C2C2-Gata Transcription Factor Family AT1G08000 39.655 1.61e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst3g00200 GATA 7.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00200 - - gmx:100813303 304.293