Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00188 ATGAGAATGGTGTTTGGGAATACAAGATGTGTGAGATTTCAAGATGATGCTGAACTAGCCAAAATCTCAACAACTAATGGTGACAATGGAATTAAGCTACTTAGTTCCAATAAAGATCACAACAATAGAGAAGCAAGAAAAGCAAGGAAGTTCTTGAAAGCCAGAGTATTATCAAGAGTTTTCTCAGAAGACTATGAGAGAGTAAGAAGAAGGATTTTAGACCCAAGAGGACAAACCATTCACAGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTCTATTCTTTTACTTGCCACTAGTTCAACATCAAGTGTGCATTGGTATTGGAACAACACTTGAAGTGATCCTCACTATTATCAGATCAATAGCAGATTTATTCTACATGATTCAGATCATCATGAGGTATCGCACGGCTTATGTTGCGCCTTCTTCGCGTGTTTTCGGTAGAGGAGAGCTTGTTATAGACCCTGCAAAGATAGCAGCTAGGTACTTCTTCAAGGGTTTCTGGCTAGACTTTGTTGCCGCATTACCCCTTCCTCAAGTGCTGATCTGGATTGTGATCCCCAATCTTGGAGGCTCAACCATGGCGAACACAAAAAATGTCCTTCGATTCATCATCATTTTTCAATATATACCAAGGCTGTTTCTGATTTTTCCACTTTCATCCCAAATTGTAAAGGCTACTGGGGTTGTGACAGAGACAGCATGGGCTGGTGCTGCTTATAACCTCATGCTTTACATGCTGGCTAGCCATTTTTTTGGAGCTTGCTGGTACCTTCTATCAATTGAAAGACAAGAAGCATGCTGGAGGAGAGTCTGTGATATGAAAAATTCATCTTGTAAATATAGTTTCTTCGACTGCAACATGGTTAAAAATCCACTCAGGGACTCATGGTTTAAGGGAAGTAATGTCACAAAGTTATGTTCACCAGAAGCTAAGTTTTATCCCTTTGGCATATATGGTGATGCAGTCACATCAAGAGTTACAACCTCACCATTCTTTAAGAAGTACTTCTATTGCCTTTGGTGGGGTCTCAGGAATTTGAGTTCTTTAGGACAAAATCTACTCACTAGCACTTTTGTTGGAGAAATAATGTTTGCCATTCTGGTTGCAACCCTTGGATTGGTTCTTTTTGCATTACTCATTGGTAATATGCAGACATACCTTCAATCAACAACTGTGAGGCTAGAAGAGTGGAGGGTCAAAAGAACTGATACAGAACAATGGATGCATCACAGACAGCTTCCTCAAGAACTAAGACAATCCGTGCGCAAATACGATCAGTATAAATGGCTGGCGACTCGAGGAGTGGACGAAGAAGCCCTTCTCAAAGATCTTCCATTAGATCTTCGAAGAGACATCAAGCGCCATCTTTGTATCGAGCTGGTTCGACGAGTTCCATTGTTTGAACAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTTCATTGTGCACAGAAAGCACATATCTTGTCCGAGAAGGCGATCCGGTCAACGAAATGCTCTTCATAATCAGAGGAAATCTTGATTCCTACACAACCAATGGCGGCCGGACCGGATTCTTCAACTCGTGCCGGATCGGCCCTGGCGATTTCTGCGGCGAGGAACTCCTAACTTGGGCCTTAGATCCAAAACCAAGTGTGATAATACTTCCTTGTTCCACAAGAACAGTTAAGGCCATATCAGAAGTTGAAGCATTTGCACTCATGGCAGAAGATTTGAAATTTGTTGCATCACAATTTAGAAGATTGCATAGCAAGCAACTTAGGCACAAGTTCAGGATTCACTCACACCAATGGAGAACTTGGGCTGCATGTTTCATACAAGCTGCATGGAGAAGGTTCAAGAAGAGAAAAGAAGCTGCTGAATTGAGGGCAAGAGAGGAAAATGAGGCTGAAACACATGCAACAAGGAGCAATAGGAAGGGTATGGATGTAAATTCAGGTGCAGATTCTGAAGTAGTAAGCTCTTTGCAGAAGCCAGCTGAACCAGACTTTTCTGTTGATGAGTGA 2046 0.4179 MRMVFGNTRCVRFQDDAELAKISTTNGDNGIKLLSSNKDHNNREARKARKFLKARVLSRVFSEDYERVRRRILDPRGQTIHRWNKIFLVACLVSLFVDPLFFYLPLVQHQVCIGIGTTLEVILTIIRSIADLFYMIQIIMRYRTAYVAPSSRVFGRGELVIDPAKIAARYFFKGFWLDFVAALPLPQVLIWIVIPNLGGSTMANTKNVLRFIIIFQYIPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHFFGACWYLLSIERQEACWRRVCDMKNSSCKYSFFDCNMVKNPLRDSWFKGSNVTKLCSPEAKFYPFGIYGDAVTSRVTTSPFFKKYFYCLWWGLRNLSSLGQNLLTSTFVGEIMFAILVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSVRKYDQYKWLATRGVDEEALLKDLPLDLRRDIKRHLCIELVRRVPLFEQMDERMLDAICERLKPSLCTESTYLVREGDPVNEMLFIIRGNLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPKPSVIILPCSTRTVKAISEVEAFALMAEDLKFVASQFRRLHSKQLRHKFRIHSHQWRTWAACFIQAAWRRFKKRKEAAELRAREENEAETHATRSNRKGMDVNSGADSEVVSSLQKPAEPDFSVDE 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00188 681 Pfam Ion transport protein 83 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Arst3g00188 681 ProSiteProfiles cAMP/cGMP binding motif profile. 475 561 IPR000595 -
Arst3g00188 681 SMART cnmp_10 475 607 IPR000595 -
Arst3g00188 681 MobiDBLite consensus disorder prediction 652 666 - -
Arst3g00188 681 PRINTS EAG/ELK/ERG potassium channel family signature 255 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Arst3g00188 681 PRINTS EAG/ELK/ERG potassium channel family signature 138 147 IPR003938 GO:0005249|GO:0006813|GO:0016020
Arst3g00188 681 PRINTS EAG/ELK/ERG potassium channel family signature 370 381 IPR003938 GO:0005249|GO:0006813|GO:0016020
Arst3g00188 681 PRINTS EAG/ELK/ERG potassium channel family signature 438 445 IPR003938 GO:0005249|GO:0006813|GO:0016020
Arst3g00188 681 PRINTS EAG/ELK/ERG potassium channel family signature 388 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Arst3g00188 681 PRINTS EAG/ELK/ERG potassium channel family signature 344 361 IPR003938 GO:0005249|GO:0006813|GO:0016020
Arst3g00188 681 MobiDBLite consensus disorder prediction 636 651 - -
Arst3g00188 681 Gene3D Helix hairpin bin 402 466 - -
Arst3g00188 681 FunFam Cyclic nucleotide-gated ion channel 1 473 592 - -
Arst3g00188 681 FunFam Cyclic nucleotide-gated ion channel 1 402 466 - -
Arst3g00188 681 SUPERFAMILY Voltage-gated potassium channels 74 397 - -
Arst3g00188 681 Gene3D - 83 399 - -
Arst3g00188 681 MobiDBLite consensus disorder prediction 636 681 - -
Arst3g00188 681 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 677 - -
Arst3g00188 681 CDD CAP_ED 475 607 IPR000595 -
Arst3g00188 681 SUPERFAMILY cAMP-binding domain-like 405 604 IPR018490 -
Arst3g00188 681 Gene3D Jelly Rolls 473 594 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00188 Arst-Chr3 1315140 1319094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00188 50 680 Ion Channels AT2G28260 76.138 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00188 K05391 - gmx:100791992 1072.38