Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00147 ATGTTGGCAGGGTCAATAGCTTGGTTCTCCTTTCTGAATGTAACCAATTACTCACCTATTACAAATTCTTTGGAGATAGAATCTCTATCGGTTACATTCCATGGACATGACCTAATAGTTGATTCTGAATTGGAGTTAAACTATGGAAGACGCTATGGTCTACTTGGATTAAATGGATGTGGAAAATCTACTTTGCTTACGGCAATAGGTTGCCGTGAACTGCCGATTCCTGAGCACATGGATATCTATCACCTTAGCAGGGAAATTGAAGCCACAGATATGTCTGCATTGGAGGCAGTCATAAACTGCGACGAGGAAAGATTGAAGTTGGAAAAAGAAGCGGAAGCTTTGGCTGCCCAGGATGATGGTGGTGGTGAAACTCTTGAACGGATTTATGAACGATTAGAAGCCCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATTTTACATGGTCTCGGTTTCAACAAGGAGATGCAAGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGAATTGCACTAGCTCGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTATGGCTTGAGGAGAGCTTGAAGAAGTTTGACCGTATACTGGTTGTGATTTCACACTCTCAGGACTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAAAAAACTAAAGCTTTACACCGGTAACTATGACCAGTACGTTCAGACTCGTTCTGAGTTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAAGAGCAGATTGCCTCAATGAAGGAATATATTGCTCGATTCGGCCACGGTTCGGCAAAACTAGCTCGCCAAGCACAAAGTAAAGAGAAAACACTGGCTAAAATGGAACGGGGTGGACTTACCGAGAGAGTGGTTAAAGACAAAGTCTTGGTGTTCCATTTTACTGATGTGGGAAAACTTCCCCCTCCTGTTCTTCAGTTTGTTGAGGTGACGTTTGGTTATACCCCTGATAATCTCATTTACAAGAATATCGACTTTGGTGTTGATTGTGACTCTAGGGTAGCCCTGGTTGGACCCAACGGTGCCGGAAAGAGTACACTACTGAAACTCATGACGGGTGACTTAATTCCCAATGATGGCATGGTCCGGCGTCACAACCATCTTCGAATTGCTCAATTTCACCAGCACTTGGCTGATAAGCTGGACATGGAGATGTCTGCACTCCAGTTTATGATGAAAGAGTACCCTGGAAATGAGGAAGAGAAGATGAGAGCAGCTATTGGGAAGTTTGGGCTGTCAGGTAAAGCTCAGATAATGCCTATGAAGAACTTGTCTGATGGGCAGAGGAGCCGTGTGATATTTGCATGGCTAGCCTGGAAGCAGCCTCATTTGCTACTCCTGGATGAGCCAACTAATCATTTGGATATCGAGACAATTGACTCATTGGCCGAGGCATTGAACGAATGGGATGGCGGCATGGTGCTCGTTAGCCATGACTTCAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTGTGTGCAAATCAAACTATCACCAGATGGGATGGTGATATCATGGACTTCAAGATGCATCTCAAATCACAGGCAGGCTTATCTGACTGA 1653 0.4446 MLAGSIAWFSFLNVTNYSPITNSLEIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLSREIEATDMSALEAVINCDEERLKLEKEAEALAAQDDGGGETLERIYERLEALDAATAEKRAAEILHGLGFNKEMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTERVVKDKVLVFHFTDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDCDSRVALVGPNGAGKSTLLKLMTGDLIPNDGMVRRHNHLRIAQFHQHLADKLDMEMSALQFMMKEYPGNEEEKMRAAIGKFGLSGKAQIMPMKNLSDGQRSRVIFAWLAWKQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCANQTITRWDGDIMDFKMHLKSQAGLSD 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00147 550 Pfam ABC transporter 42 196 IPR003439 GO:0005524
Arst3g00147 550 Gene3D - 22 288 IPR027417 -
Arst3g00147 550 ProSitePatterns ABC transporters family signature. 168 182 IPR017871 GO:0005524|GO:0016887
Arst3g00147 550 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 22 545 - -
Arst3g00147 550 Pfam ABC transporter 235 308 IPR032781 -
Arst3g00147 550 Coils Coil 242 262 - -
Arst3g00147 550 Coils Coil 100 120 - -
Arst3g00147 550 Pfam ABC transporter 351 482 IPR003439 GO:0005524
Arst3g00147 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 264 IPR003439 GO:0005524
Arst3g00147 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 271 IPR027417 -
Arst3g00147 550 CDD ABCF_EF-3 24 241 - -
Arst3g00147 550 CDD ABCF_EF-3 335 527 - -
Arst3g00147 550 Gene3D - 299 548 IPR027417 -
Arst3g00147 550 FunFam ATP-binding cassette sub-family F member 3 295 549 - -
Arst3g00147 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 531 IPR027417 -
Arst3g00147 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 335 550 IPR003439 GO:0005524
Arst3g00147 550 SMART AAA_5 360 546 IPR003593 GO:0016887
Arst3g00147 550 SMART AAA_5 48 250 IPR003593 GO:0016887
Arst3g00147 550 FunFam Abc transporter f family member 1 24 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00147 Arst-Chr3 1023329 1027315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00147 155 222 Calmodulin-binding Proteins AT2G36910 41.429 4.15e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00147 K06185 - gmx:100809491 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01911 8 27513429 27517254 Arst3g00147 3 1023329 1027315 PCT