Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00127 ATGCTCGCATTCCGGCCATGCTTCTTCAATCCACCACTCTGCCGCCCCATTTCCGTTAAAGTTCTCTCCTTTTTCGCATTTCCTTCTTCTCTTTCCTCTCACATTCTCTCTCTCCCTTTCCCCCATCGCACAATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCTCGCGCTGCCGCCGCCGCCGCTGCCAAGAAGAAGAAATCCGAGCAGTCGCAGCAACCAACTGTTTCTTCTCCCAAGAAACGAAAACCTTCACCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAACGACCCCAAACCCTCCGAAACCGTTCCTACGCCAACGAGTGACCCGCCCAAGCAAGAACCGGAGAAAGAAGGCCCTCCTCCGACCAAGACTCGCCACGTGTCTTCTTCATCTGCCTTGCAGGAGCTGAAGAAGCGCATTCCGCAGCTGAAGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTGCTGGCTTTGGCGCTTGAAATGATTTCTGCGGAACCTGGCAGAATCAAGATGACAGATATTGTGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTCGCGAAGAGGGTTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGAGACTTCGATTATTAAGGCACTTGCTGAGGCAACTGGAAGTACTGAATCCAAAATCAAGAAGCAGTATCAGGGCGAGGGTGATTTGGGAAGAGTTGCCAAGATATGCCGTTCATCTCAGTCCATGATGCGGAAGCCTGAGGCTCTGACTATTAGGAAAGTTTTCAACACCTTCCGTCTTATTGCCAAGGAATCTGGAAGAGACAGTCAAAAGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCAACTGACTGCGAACCTCAATATCTTATCTGTCTTCTACAGGGAAAATTGCGGATTGGTGTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTACAGAGTGAAGAACATTCTAAACCACCTGATGGCATTAAGTCTCCTTTGGAAGAGGCTGTAAAAATTGTTAAACAAGTCTACTCTGTTCTTCCTGTCTACGACGAAATAGTATCTGCACTTCTTACGCATGGTGTATGGAAACTTCCATCAACATGTAATTTTACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACCAACGAAGGGTATCTCTGATATTCTAAATTCATTGCAAGATGTGGAGTTTACTTGTGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCTGAGCGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGGATATGATCGTGAGAAACAGACCATCCGTTCCTTCCAGGATCTTACTACTCGGCCTCGTAAAAATGTATCTGTGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCGAGTACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAATGACATTGAGGAAATTCAGAAATTTCTCGACAAAGCTGTTGCGTCAAGCTGTGAGGGATTAATCATTAAAACTTTAAGTGAAGATTCTACATATGAACCTTCCAATCGGTCACACAATTGGCTAAAACTGAAGAAAGATTATCTGGATAACATAGGGGACTCACTAGATTTGGTACCTATAGGTGCATTCTACGGACGTGGGAAACGTACAGGAGTCTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAACGAAGAATTTCAAAGTATTTGTAAGATTGGAACGGGATTTACTGAAGACGTGCTCGAACAGCGTTCTAAAAGTCTTGGTTCTCAAGTGATTCCTGGGCCAAAGCGATACTATCAATGTGGAGATAAAATGAAGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATTTGACCATTAGCCCAGTTTACCGAGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCACGGCTAGTTCGAGTTCGACCTGACAAAACACCCGAGCAGGCCTCATCATCTGAGCAGGTTGCTGAGATGTATAATGCTCAAAAAGCCGCTCAAACTAAAGAAAAAGAAAAAGAAAAAAACAAACAGGATGGTAGTGAGTCACCAAAAAAACAGATTGGCAGTGAGTCACCAAAAAAACAGATTGGCAGTGAAGACAAAGACGAAGACGAAGTCGCAGATGAAGATGAAGATGAAGATGTAGATGTAGATGCAGATGAAGATGAAGATAAGTGA 2514 0.4451 MLAFRPCFFNPPLCRPISVKVLSFFAFPSSLSSHILSLPFPHRTMTKPPSAFDALMSGARAAAAAAAKKKKSEQSQQPTVSSPKKRKPSPSTLPTPTSTLNPNDPKPSETVPTPTSDPPKQEPEKEGPPPTKTRHVSSSSALQELKKRIPQLKAKPSKFDPSSVACWEKGTPVPFSLLALALEMISAEPGRIKMTDIVCNLMKTVIYSTPEDLVPLIYLFAKRVAPAHEGLELGIGETSIIKALAEATGSTESKIKKQYQGEGDLGRVAKICRSSQSMMRKPEALTIRKVFNTFRLIAKESGRDSQKKKKNHIKALLVAATDCEPQYLICLLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPPDGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSTCNFTPGIPVGPMLSKPTKGISDILNSLQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSTVSSFVLDCEIVGYDREKQTIRSFQDLTTRPRKNVSVDNIKVDVCIFAFDILYLNGRVLLQDNLKIRREHLYASFEEETGVFQYATAITSNDIEEIQKFLDKAVASSCEGLIIKTLSEDSTYEPSNRSHNWLKLKKDYLDNIGDSLDLVPIGAFYGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFTEDVLEQRSKSLGSQVIPGPKRYYQCGDKMKPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSDKGISLRFPRLVRVRPDKTPEQASSSEQVAEMYNAQKAAQTKEKEKEKNKQDGSESPKKQIGSESPKKQIGSEDKDEDEVADEDEDEDVDVDADEDEDK 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00127 837 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 156 406 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst3g00127 837 MobiDBLite consensus disorder prediction 772 837 - -
Arst3g00127 837 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 440 448 IPR016059 GO:0003909
Arst3g00127 837 CDD OBF_DNA_ligase_I 628 773 - -
Arst3g00127 837 Pfam ATP dependent DNA ligase domain 416 620 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Arst3g00127 837 Pfam ATP dependent DNA ligase C terminal region 645 756 IPR012309 GO:0003910|GO:0006281|GO:0006310
Arst3g00127 837 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 408 626 - -
Arst3g00127 837 Pfam DNA ligase N terminus 174 349 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst3g00127 837 Gene3D DNA ligase/mRNA capping enzyme 445 570 - -
Arst3g00127 837 MobiDBLite consensus disorder prediction 63 143 - -
Arst3g00127 837 ProSitePatterns ATP-dependent DNA ligase signature 2. 594 620 IPR016059 GO:0003909
Arst3g00127 837 SUPERFAMILY Nucleic acid-binding proteins 628 774 IPR012340 -
Arst3g00127 837 NCBIfam ATP-dependent DNA ligase 232 771 IPR000977 GO:0003910|GO:0005524|GO:0071897
Arst3g00127 837 FunFam DNA ligase 625 785 - -
Arst3g00127 837 FunFam DNA ligase 151 418 - -
Arst3g00127 837 ProSiteProfiles ATP-dependent DNA ligase family profile. 522 658 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Arst3g00127 837 Gene3D - 625 788 IPR012340 -
Arst3g00127 837 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 69 790 - -
Arst3g00127 837 MobiDBLite consensus disorder prediction 70 106 - -
Arst3g00127 837 Coils Coil 768 788 - -
Arst3g00127 837 CDD Adenylation_DNA_ligase_I_Euk 405 623 - -
Arst3g00127 837 FunFam DNA ligase 445 570 - -
Arst3g00127 837 MobiDBLite consensus disorder prediction 814 837 - -
Arst3g00127 837 Gene3D - 426 624 - -
Arst3g00127 837 Gene3D - 150 418 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst3g00127 837 MobiDBLite consensus disorder prediction 776 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00127 Arst-Chr3 883178 889916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00127 1 775 Core DNA Replication Machinery Family AT1G08130 62.324 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00127 K10747 - gmx:100783155 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00127 3 883178 889916 Arst3g00127 3 883178 889916 ECH