Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00105 ATGGATTACAAGGAAGACTATTTCTCCAACACTAACAGTGATAATTGTAATGTTGTTCATCATGATGCTACCCATCATATAGCCAAGGGAAAACGGACCAAAAGGCTGAGGCTTTTGTGTGGCGGCACAACCCTCATGACGGCGGCGTCTAGCTGTTCTAGCGCTTCCGGGGATCATGGCAGCGGCGATGATCACGGCTCGTTTTCGATTTCTTCCACAACGAATCAAGAGGAAGAAGATATGGCTAATTGCTTGATTCTTCTTGCTCAAGGAGGAGGAGATTCTCATCAAAAACCGCCACAAATTGATGATCAAGATGAAGATGATAACAAGAAGATTATTGAAATCAAGAGTAGGAAATTCTCGGAGATTGAAACCGCCACCATAAACAACAAGGTTGGTTTCTATATTTATGAGTGCAAGACTTGTAACCGAACCTTCCCTTCCTTTCAAGCCTTGGGTGGTCATAGAGCCAGTCACAAGAAGCCTAAGCTCACAACAATCCCTGCCGCCGAGGACAAGAAACCACCACCACCGTCTCCGCCACCTCCACTGCCACCCCCACCACCGCAGCAACTTATGATGAACACCAATTATGACCATAGCCAGCAGACTGAAACTGTCCCTCCAAATAATAATAATCCAATAATTTCTCTACAATTTGGGAGTGGGCAAAAAGGTAATTTCCACAACAACAACAAGCCCAACAAGATTCACGAGTGCTCCATATGTGGCTCCGAATTCACATCCGGCCAAGCACTGGGTGGACACATGAGAAGGCATAGGGCTACAGCGGCCGCAGCCGCCAATAATACTGCTCAGGCCAATGTTGGCCTAAGCAGAATTGAGGCAACTTCTACTGTTATAACAACAACAGTAGAAGTTCAGCCTCGAAATATTCTAGAATTGGATCTCAACCTTCCGGCTCCGGAGGAAGACCTCCGGGAGCCAAAGTTTCAGTTCGCTACCGCGGCAACTAAGAAATCTATGGTGCTCTCAGCTGCTCCGGCTTTGGTGGACTGCCATTATTAG 1032 0.469 MDYKEDYFSNTNSDNCNVVHHDATHHIAKGKRTKRLRLLCGGTTLMTAASSCSSASGDHGSGDDHGSFSISSTTNQEEEDMANCLILLAQGGGDSHQKPPQIDDQDEDDNKKIIEIKSRKFSEIETATINNKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLTTIPAAEDKKPPPPSPPPPLPPPPPQQLMMNTNYDHSQQTETVPPNNNNPIISLQFGSGQKGNFHNNNKPNKIHECSICGSEFTSGQALGGHMRRHRATAAAAANNTAQANVGLSRIEATSTVITTTVEVQPRNILELDLNLPAPEEDLREPKFQFATAATKKSMVLSAAPALVDCHY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00105 343 SUPERFAMILY beta-beta-alpha zinc fingers 137 261 IPR036236 -
Arst3g00105 343 PANTHER ZINC FINGER PROTEIN ZAT5 67 326 - -
Arst3g00105 343 SMART c2h2final6 138 160 IPR013087 -
Arst3g00105 343 SMART c2h2final6 239 261 IPR013087 -
Arst3g00105 343 Gene3D Classic Zinc Finger 136 261 - -
Arst3g00105 343 Pfam C2H2-type zinc finger 239 263 - -
Arst3g00105 343 Pfam C2H2-type zinc finger 138 163 - -
Arst3g00105 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Arst3g00105 343 MobiDBLite consensus disorder prediction 52 74 - -
Arst3g00105 343 MobiDBLite consensus disorder prediction 172 193 - -
Arst3g00105 343 MobiDBLite consensus disorder prediction 154 196 - -
Arst3g00105 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Arst3g00105 343 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Arst3g00105 343 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Arst3g00105 343 MobiDBLite consensus disorder prediction 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00105 Arst-Chr3 744033 745364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00105 26 343 C2H2 Transcription Factor Family AT2G28200 41.104 2.45e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst3g00105 zf-C2H2_6 2.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00105 - - aip:107629278 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01929 8 27749406 27750612 Arst3g00105 3 744033 745364 ECH
Arst3g00105 3 744033 745364 Arst3g00105 3 744033 745364 ECH
Arst8g01929 8 27749406 27750612 Arst3g00105 3 744033 745364 PCT