Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00096 ATGGTGATGATGGAATTCCAGAACCGCAGAGTGCTACTACTCCTCAACAAGGATGTTCCAATATCTTCACCGCCGCCGCCGCCGCCGACAGCGTCGTCAACTCCGGCGATGGCCATGTATGGATCATCGTCATTGCAAGTACCAGCTCGTCCGATGTTCAGTTCAAACATAGCCTACGCCTTCATCATCCTCCTCACCACGCTCTTCTTCCTGGCCTTCATCCTCCTCTTCTTCCGCCAATTCTCGTCCTCCGGGAGCAGAAGCCGTTGCTCGGAGGAAACGACGGAGAAGTGGGCGCTGCCGACAGTTGCGTACAGTAGGGGGAAGAGGAAGGTGAAAGAGCAGGAAGAGGAGTGCGTGATATGTTTGGAAGAGCTTCGCGAGGGTGAAACGGTAAAAATGATACCTCACTGCAAACACGTGTTCCATCCTAACTGCATTGACACGTGGCTCCTCACTCACGTGACATGCCCCGTGTGCAGATGCCCCAAGGTTTGTGAAGAAGAAGAGAATGATGAGGGAGAAACAAGAATAAGAAGAGAGGTAGTTGAAATTCAGTTACAAGAGTCTCAAACTGAAAGAGCGGTGAGTAGTGATGAGAGAAGAGAAGCAACTGGGTTGAGGAGATCACTTAGCTTCTGA 642 0.5125 MVMMEFQNRRVLLLLNKDVPISSPPPPPPTASSTPAMAMYGSSSLQVPARPMFSSNIAYAFIILLTTLFFLAFILLFFRQFSSSGSRSRCSEETTEKWALPTVAYSRGKRKVKEQEEECVICLEELREGETVKMIPHCKHVFHPNCIDTWLLTHVTCPVCRCPKVCEEEENDEGETRIRREVVEIQLQESQTERAVSSDERREATGLRRSLSF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00096 213 SUPERFAMILY RING/U-box 113 165 - -
Arst3g00096 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 42 171 - -
Arst3g00096 213 Pfam Ring finger domain 118 161 IPR001841 -
Arst3g00096 213 MobiDBLite consensus disorder prediction 189 213 - -
Arst3g00096 213 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Arst3g00096 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 165 IPR013083 -
Arst3g00096 213 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00096 Arst-Chr3 691151 692675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00096 53 213 C3H Transcription Factor Family AT2G27940 32.487 1.78e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00096 - - aip:107634124 350.517