Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00079 ATGGAGCCACCGGTCGTTAGATCGAGAGGGAGGCCGCGGAAGCGTAGAAGAAAAGAGGAAGAAATGGAAGCTCTGGAAGCAAAGAGGCAAGCCTTGGCAACCAGATCGATAGCGTTGGTTGGACGATTCGTGCTGAAGGAGTTCCCGAAAATCGGTGTTTTCCTCGGTAAAGTTGTGTACTACGAGTGTGGCTTGTATAGAGTTAGTTATGAGGACGGTGATTTCGAGGATTTGGATAGTGGTGAGGTTCGTGCTGTTCTACTAAATGACAGTGATTTTGATGATGATTTGACTAAGAGGAAGGGTAAATTGGAGCAATTAGTGTTGAAGAATAGTGTAAAGGTTCAAGCTAAGTCGGTGAAGGCTTCTGATGAGATGAATAAAGATGAATCCAAGGTTGATGGACCTGTTTCGGGAGAACTTAACGGTGAAAACGGTGAGGAACAAGCTGAAGGTGGCGATGATTTGTTGAGTGATGATTATTCTGATTCAGATGCTGAGGCAGTGCCTGCGGTGCCACCGCGGCCGCCTTTGTTGCAGTTGCCACCATCGTCAGGGACTATTGGTGTGCCGGAGCAGTGTGTTTCGCACCTGTTTGCTGTTTATGGTTTCTTGAGATCATTCAGCACTAGGTTGTTCCTGGCACCGTTTACTTTAGATGATTTTGTTGGTTGTCTTAATTGCCGAGTTGCTAACAGCTTGATTGATTCTATTCACGTCTCCCTATTGCGGGTATTGAGGCATCATCTTGAATCCGTTTCATCTGAAGGCTCAGAGCTTGCATCGAAATGCCTTAGGTGCAATGATTGGGGCTTGCTTGATGCATTGACTTGGCCTGTTTTTGTGATTCAATATTTATTAGTTAATGGACACACAAAAGGACCTGAATGGAAAGGGTTTTATGATGAGGCTTTTGCTTGCGAGTATTATTTATTGCCTGTAAGTAGGAAGTTAATGATATTGCAAAAACTATGCGATGATGTTTTGGATTCAGAGGAGCTAAAAGCTGAAATGAACATGCGGGAAGAATCAGAGGTTGGGGTGGATTATGACGCAGAAGATATCGTTGCTGCAGAAAATGGGCCTGGAAAAGTCCTACCAAGACATGCCAATACTGCTTGTGAGGATAAAGGAGCCATGAAGATAGTTTTGGCATCAAATTTTGTGAACCAACATGTTAACCCTAATAATTCCAATTCCAGAAATGCAGGAAACATTGGTGATGGTGATGATAGAAATGGAGATGAATGTCGTCTTTGTGGTATGGATGGGACCTTGATTTGTTGTGATGGGTGCCCCTCTGCTTATCACTCCAGGTGTATTGGTGTTATGAAAATGCATATACCAGAAGGACCGTGGTATTGTCCAGAATGCAAGATTAACATGATTGGGCCAACAGTTGCAAAGGGAACATCACTTAGAGGTGCTGAAATATTTGGAATGGATTTGTACGGGCAGCTTTTCATGAGTTCTTGCGACCACTTATTGGTGCTCAATGTCAACAATGATGAATTCTGTCTTAAATATTACAACCAGAGTGACATTCCTAATGTTATCCAAGTGCTTTGCGGATCCTTGCAGCATAGACCAATATACTATGATATTTGCATGGCAGTTATGCAATATTGGAATATTTCTGAAAGAGTCTTGCCTCTTCCTCCTCCGTCAAGTGAAGATGGTCATAAGCCTGTTAGTTTGGTGAATGGAGAGTACTCTCACACTTTGAGCTTGATTTATAGTGGCAATGTAGTCCCTTCATATGATACCTCAACAACTAACACTGTAAATCATGGTCCCGAAAGCAGCGGTAATGAGCTCCCTACCACAAATATGAAGCTTCCTCAGGAAACTAGGATGGTGTCACTAATGTCAAATGATTCTGGGTCTGTTTCTGTTAGTAATCAGTCTGAGTTGAACTATCGAAGTTCTGTCAATGGGTTAACTGTGGTGGCTTCTTCACGCTCTTTGATAAACAGCCAATATAGTAATAATGGCCATTCAAATGATATTGTGCTGCCAGTGAAATTTTCTCTGGAAACCAAAGAGAGCACCCGAGTTGGCTTTGGAAAGGTGGAACACAAAACAACTAACAATGTTGGGTACATGGGTTTGTCCTATAAACCTTTGTCATACATTAATAACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTGGCCGTTCTATCCTCAGAGGAATCTAGGTCAGAGGGTCATGTTTCCGACAGTCAGAAGAAAACGATAGCTCAGATCACATATTTGCAAGCAAAAGCGTTCTCACAAATAGCTTCACGTTTCTTTTGGCCAGCTACTGAAAAGAAGCTAATGGAGGTGCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTTCAAGCAAGAGAGGATGCATGTTAAATCATGCCCTTATAAATGCCACAAAAAGTGCGCTGAAAGTTCTTGCTGGTTTTCCTCCACTAAGGAGTGGAGAGGGAATCCTTCCTAGTATTGCAACATACATTTTATACATGGAGGAATGTTTACATGGTTTAATAGTTGGGCCCTTTCTAAGTCCAAGTTATAGAAAGCAATGGCGAATGCGGGTTGAACAGGCCACAACATTTAGCTCTATCAAACCACTCTTGCTTGATCTTGAGGAAAATATTCGCATGATTACTTTCTGCGGGGATTGGCATAAGTTGATGGATGATTGGTTGGTTGAATTTTCTATGATTCAAAGGTCTGCATCTGCTCTTGGAACAACACAGAAACGTGCACCAAGTGGGAGGCGTTACAAGAAACGCTCAGCTACTGAAGAACCTACACCTGATGGTTGCCATGAAAGCTTTGAGTGGTGGCGGGGTGGGAAATTCACCAAGTTTATATTCCAAAAAGCTGTTTTGCCAAGATCCCTGGTCAGGAAAGCTGCACGCCAAGGTGGTTCGAGGAAAATCTCTGGTATTTTCTATGCTGATGGATCTGAAATCCCTAAAAGGACCAGACAGTTTGTGTGGAGAGTTGCAGTACAGATGTGTAAGACTGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATATCAGATGGAGTGATCTAATTCGTCCAGAGCAGAATATTCAGGATGGTAAAGGTCAAGAAACTGACGCTTCTGCTTTCAGAAATGCAAATATTTGTGATAAAAAGCTTGTAGAGGGGAAAACTTGTTACGGAGTAGCATTTGGGAGCCAAAAGCATCTTTCTACTCGTTTAATGAAAAATGTTATTGAAATTGAGCAAGGTATAGAAGGAAAGGAAAAGTATTGGTTTCCCGAAACACGCATTCCTTTATATTTGGTGAAAGAGTATGAAGAAAGCAATGGAAACGGACCATCTGTTGGTGAGCACTTGAATACTGCATCACAACAATTGCTCAGTCGGTGGTTGAAAGCATCCCGCAAGGATATTTTTTTCTACCTTACCTGCAAGAGAGACAATTTGGACATGTTCTTGTGTTCTGTATGTCATACTGGTGTTCCATTAAGGAATGCGCTCAAGTGCAATACTTGTCAAGGTTTTTGTCACGAGGGCTGTTCCCTAAGGTCAACAATCTTCACAAATAAGAAAGTTGAGTACTTGACCACGTGCAACCAATGTTATCATGCCAAGTTCCTTGCTCAAAAGGAGACCAGTAATGAATCTCCAACCAGCCCCTTACTCTTACAAGGACGTGAAAACAACTCTCTTCCTATCCTAAAGGGATTAAAGTCTAAATATTCTGATCTAGCACAGAAGTCTGCCAAGGCAAAGGATAGCCGTCCAGAAGCAAAACAAGTTGCTTCAATGACAGTTTTGAAGGAAGCAAAGACTTCCGCCAGGTCAAAGGATAGTCATCCAGACAGAAAACAACTTGCTTCTGGTTCCAGCTCGGCAACCGTAACCCGTCGTAGGAATTGTTCTTGGGGTGTGATATGGAAGAAGAAAAATATTGATGATACAGGCGATGAATTTAGGCTCAAAAACATACTTTTAAAGGGAGCTTCAGGAATTCCTCAAGAGCCACCAATTTGTCACTTGTGCCGTAAGAAATACTGTTCCGATCTGATGTACATTCACTGTGAGTCATGCTCAAATTGGTATCATGCTGAAGCTGTTGAACTCGATGAGTCCAAAATTTTTGATGTACTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGATTGTCCTTATGCTGATACTAAGCGCAAGACACAAGATGGTAAGAGGACAAGGACTTCAAAGAAAGAGTATTCTGGTCCAGATTCTGATTCTGGAACCAAGTTAGAGGATGCTGAGTGGAGTACTCTCTCTGGCCCTGGGCCTCGGAAACTACCAGTGAGACGGCATGTTAAACGTGAGGGGGACTGTGATGGATTTTACGTAGAGAAACCGTTGTATGATGAAACTTTGGCACATAATGAAGCGGGTGATATGTACAAACCCGAGCCTTTAGACTATGACTCTGTCGTGCCGAATGATAGCAATCTACTTAATGAAGCGGAAGGTTCACAGTATGAATTTGCGGACTTTGAACCCCATACCTACTTCTCTGTAACGGAACTGCTGCTCCCAGATGATAGTAGCCAGCTTGAGGGAGCTGATGCATCTGGTGAATTGTCAGGATATTTGGGGAATTCTTGTACACAAGTTCCTGAAGAATGCGGTGTAACTTTAGATGACAAATCAGAACCTGCCCTATCCTTTGAAGACGCTGTTTATAGTTGTTGGCAGTGCGGGCAAATGGAACCAGCCCCTGATCTGTGTTGCGAGATTTGTGGGATTTTTATTCACAGTCAATGCTCTCCTTGGGTTGAGTCACCATCAAGGCTTGGAAATTGGAGGTGTGGCAATTGCCGGGAATGGCAATAG 4890 0.4282 MEPPVVRSRGRPRKRRRKEEEMEALEAKRQALATRSIALVGRFVLKEFPKIGVFLGKVVYYECGLYRVSYEDGDFEDLDSGEVRAVLLNDSDFDDDLTKRKGKLEQLVLKNSVKVQAKSVKASDEMNKDESKVDGPVSGELNGENGEEQAEGGDDLLSDDYSDSDAEAVPAVPPRPPLLQLPPSSGTIGVPEQCVSHLFAVYGFLRSFSTRLFLAPFTLDDFVGCLNCRVANSLIDSIHVSLLRVLRHHLESVSSEGSELASKCLRCNDWGLLDALTWPVFVIQYLLVNGHTKGPEWKGFYDEAFACEYYLLPVSRKLMILQKLCDDVLDSEELKAEMNMREESEVGVDYDAEDIVAAENGPGKVLPRHANTACEDKGAMKIVLASNFVNQHVNPNNSNSRNAGNIGDGDDRNGDECRLCGMDGTLICCDGCPSAYHSRCIGVMKMHIPEGPWYCPECKINMIGPTVAKGTSLRGAEIFGMDLYGQLFMSSCDHLLVLNVNNDEFCLKYYNQSDIPNVIQVLCGSLQHRPIYYDICMAVMQYWNISERVLPLPPPSSEDGHKPVSLVNGEYSHTLSLIYSGNVVPSYDTSTTNTVNHGPESSGNELPTTNMKLPQETRMVSLMSNDSGSVSVSNQSELNYRSSVNGLTVVASSRSLINSQYSNNGHSNDIVLPVKFSLETKESTRVGFGKVEHKTTNNVGYMGLSYKPLSYINNYMHGDFAASAAAKLAVLSSEESRSEGHVSDSQKKTIAQITYLQAKAFSQIASRFFWPATEKKLMEVPRERCGWCFSCKAPVSSKRGCMLNHALINATKSALKVLAGFPPLRSGEGILPSIATYILYMEECLHGLIVGPFLSPSYRKQWRMRVEQATTFSSIKPLLLDLEENIRMITFCGDWHKLMDDWLVEFSMIQRSASALGTTQKRAPSGRRYKKRSATEEPTPDGCHESFEWWRGGKFTKFIFQKAVLPRSLVRKAARQGGSRKISGIFYADGSEIPKRTRQFVWRVAVQMCKTASQLALQVRYLDFYIRWSDLIRPEQNIQDGKGQETDASAFRNANICDKKLVEGKTCYGVAFGSQKHLSTRLMKNVIEIEQGIEGKEKYWFPETRIPLYLVKEYEESNGNGPSVGEHLNTASQQLLSRWLKASRKDIFFYLTCKRDNLDMFLCSVCHTGVPLRNALKCNTCQGFCHEGCSLRSTIFTNKKVEYLTTCNQCYHAKFLAQKETSNESPTSPLLLQGRENNSLPILKGLKSKYSDLAQKSAKAKDSRPEAKQVASMTVLKEAKTSARSKDSHPDRKQLASGSSSATVTRRRNCSWGVIWKKKNIDDTGDEFRLKNILLKGASGIPQEPPICHLCRKKYCSDLMYIHCESCSNWYHAEAVELDESKIFDVLGFKCCKCRRIKSPDCPYADTKRKTQDGKRTRTSKKEYSGPDSDSGTKLEDAEWSTLSGPGPRKLPVRRHVKREGDCDGFYVEKPLYDETLAHNEAGDMYKPEPLDYDSVVPNDSNLLNEAEGSQYEFADFEPHTYFSVTELLLPDDSSQLEGADASGELSGYLGNSCTQVPEECGVTLDDKSEPALSFEDAVYSCWQCGQMEPAPDLCCEICGIFIHSQCSPWVESPSRLGNWRCGNCREWQ 1629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00079 1629 CDD PHD_SF 1347 1394 - -
Arst3g00079 1629 MobiDBLite consensus disorder prediction 121 135 - -
Arst3g00079 1629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 463 IPR013083 -
Arst3g00079 1629 MobiDBLite consensus disorder prediction 147 162 - -
Arst3g00079 1629 MobiDBLite consensus disorder prediction 1405 1435 - -
Arst3g00079 1629 Pfam DDT domain 193 248 IPR018501 -
Arst3g00079 1629 MobiDBLite consensus disorder prediction 120 183 - -
Arst3g00079 1629 Coils Coil 15 35 - -
Arst3g00079 1629 Pfam PHD-finger 417 459 IPR019787 -
Arst3g00079 1629 SUPERFAMILY FYVE/PHD zinc finger 406 462 IPR011011 -
Arst3g00079 1629 MobiDBLite consensus disorder prediction 1257 1302 - -
Arst3g00079 1629 MobiDBLite consensus disorder prediction 1405 1454 - -
Arst3g00079 1629 SMART PHD_3 1347 1395 IPR001965 -
Arst3g00079 1629 SMART PHD_3 416 459 IPR001965 -
Arst3g00079 1629 SMART PHD_3 1581 1626 IPR001965 -
Arst3g00079 1629 SMART PHD_3 1162 1211 IPR001965 -
Arst3g00079 1629 ProSiteProfiles Zinc finger PHD-type profile. 414 461 IPR019787 -
Arst3g00079 1629 MobiDBLite consensus disorder prediction 1 22 - -
Arst3g00079 1629 ProSitePatterns Zinc finger PHD-type signature. 417 458 IPR019786 -
Arst3g00079 1629 MobiDBLite consensus disorder prediction 591 610 - -
Arst3g00079 1629 ProSiteProfiles DDT domain profile. 192 252 IPR018501 -
Arst3g00079 1629 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 307 339 IPR028942 -
Arst3g00079 1629 MobiDBLite consensus disorder prediction 917 941 - -
Arst3g00079 1629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1336 1413 IPR013083 -
Arst3g00079 1629 PANTHER PHD FINGER FAMILY PROTEIN 35 1463 - -
Arst3g00079 1629 SMART testlast3 192 252 IPR018501 -
Arst3g00079 1629 SUPERFAMILY FYVE/PHD zinc finger 1343 1400 IPR011011 -
Arst3g00079 1629 CDD PHD_SF 1581 1625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00079 Arst-Chr3 580920 589348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00079 27 1629 PHD Transcription Factor Family AT5G35210 41.039 0.0 1098
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Arst3g00079 DDT 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00079 - - lang:109351702 2013.42