Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00078 ATGGAGCAACAAAACCCTCAACAACCCTCTAACCCCATTTTGGACCACACTAGCTCTTTCAACAACAACACTATCGTGCCGAACGAAGCAAAGGTGGCGGCGGTGCCTGATTCTGGAGGGTCGGACTGGGTGTCAAGACCCGAAGCTGGAGGTTGGGAGCAGCATCATGGAGTGGTGGTTGTGAAGAGGGGGAGAGGGAGACCTCGAAAGTATGTCGACAAAGACGGCAGCGGGGGAGGGATGATGACGTCTCCGACGTCAGAGCCGCCGCCTTCGGGGTTTGCGGAAGCGGTAGCGTCCCCACTTGAGAGCCCTGCGGTAAAGAAGGGAAGAGGAAGGCCACGTGGTTCTGGAAAACTGCAGATTCTAGCCTCCATTGGTGGGTTTGTTGCAGAAACAGCTGGTGGAAGCTTCACACCTCATGTGATGATTGTTGGTACTGGAGAGGATGTAGTAAGTAGGATATTGTCATTTTTCCAAAAAGGCCCTCGTGTTGTTTGCATACTTTCAGCAACTGGTTCTGTGTCTAGTGTTGTGATTCGCCAACCTGGTGGTCTATTGAGATATGAGGGTAGGTTTGAGATTTTATCTTTATCTGGATCATGCACCTACATCAATGGCACTGGTAATGCATATCGCAAAGATGGCATGTTGAGTGTTTCTCTTGCTAAACCTGATGGCATGGTTTTTGGTGGTGGCATTGAGAACTCTTTGATTGCTGCTGCCCCTATTCAACTTGTTTTGGCCACTTTCAAGCAAAACATTAGCAACCAAATCAAGAAGAGGTACTCATCTGACCCTTCTTCTGATGGTGTCCCCTATGCTGCTGCGGCAGGCGTTGGTATCGAGCTGAATATTCCGGATTCCTCAAGGGGTAGCCATAAAGTTCTTAAGTTGTCATTGCAAGAACATAGTTTTCCTTCACCACCAGGAAGAACAAATGCAGTTCAAGATGGTGTCACAATTGTAACAACTAATGACATATCGGATAATGTGATTCCTACAACAACAAATGGGGTATCAAATAATGTCATTCATGAAGATCTCAACATGCATTCTTCTTCAATTGAGGATGCTATTGACCTTGACCAAACAACCTCACCAGCCGATGTGGATACTAATTAA 1125 0.4702 MEQQNPQQPSNPILDHTSSFNNNTIVPNEAKVAAVPDSGGSDWVSRPEAGGWEQHHGVVVVKRGRGRPRKYVDKDGSGGGMMTSPTSEPPPSGFAEAVASPLESPAVKKGRGRPRGSGKLQILASIGGFVAETAGGSFTPHVMIVGTGEDVVSRILSFFQKGPRVVCILSATGSVSSVVIRQPGGLLRYEGRFEILSLSGSCTYINGTGNAYRKDGMLSVSLAKPDGMVFGGGIENSLIAAAPIQLVLATFKQNISNQIKKRYSSDPSSDGVPYAAAAGVGIELNIPDSSRGSHKVLKLSLQEHSFPSPPGRTNAVQDGVTIVTTNDISDNVIPTTTNGVSNNVIHEDLNMHSSSIEDAIDLDQTTSPADVDTN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00078 374 Gene3D - 140 266 - -
Arst3g00078 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 23 273 IPR039605 GO:0003680
Arst3g00078 374 ProSiteProfiles PPC domain profile profile. 135 278 IPR005175 -
Arst3g00078 374 SMART AT_hook_2 62 74 IPR017956 GO:0003677
Arst3g00078 374 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Arst3g00078 374 CDD DUF296 139 251 IPR005175 -
Arst3g00078 374 MobiDBLite consensus disorder prediction 1 50 - -
Arst3g00078 374 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 252 IPR005175 -
Arst3g00078 374 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 255 - -
Arst3g00078 374 MobiDBLite consensus disorder prediction 1 28 - -
Arst3g00078 374 MobiDBLite consensus disorder prediction 67 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00078 Arst-Chr3 539711 547427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00078 61 251 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 46.667 1.48e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00078 - - aip:107632385 668.307