Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00077 ATGGAGCAACAAAACCCTCAACAACCCTCTAACCCCATTTTGGACCACACTAGCTCTTTCAACAACAACACTATCGTGCCGAACGAAGCAAAGGTGGCGGCGATGACTGATTCTGGAGGCTCGGACTCGGTGTCAAGACCCGAAGCTGGAGGTTGGGAGCAGCATCATGGAGTGGTGGTTGTGAAGAGGGGGAGAGGGAGACCTCGAAAGTACTTCGACACAGACGGCAGCGGGGGAGGGATGATGACGTCTCTGACGTCAGAGCCGCCGCCTTCGGGGTTTGCGGAAGCGGTAGCGTCCCCACTTGAGAGCCCTGCGGTAAAGAGGGGAAGAGGAAGGCCACGTGGTTCCGGAAAACTGCAGATTCTGGCCTCCATTGGTGGGTTTGTTGTAGAAACAGCTGGTGGAAGCTTCACACCTCATGTGATGATTGTTGGTACTGGAGAGGATGTGGTAAGTAGGATATTGTCATTTTTCCAAAAAGGCCCTCGTGCTGTTTGCATACTTTCAGCTACTGGTTCTGTGTCTAGTGTTGTAATTCGCCAACCTGGTGGTCTATTGAGATATGAGGGTAGGTTTGAGATTTTATCTTTATCTGGATCATGCACCTACACCAATGGCAATGGTAATGCATATCGCAAAGATGGCATGTTGAGTGTTTCTCTTGCTAAACCTGATGGCAGGGTTTTTGGTGGTGGCATTGAGAACTCTTTGATTGCTGCTGCCCCTATTCAACTTGTTTTGGCCACTTTCAAGCAAAATATCAGCAACCAAATCAAGAAGAGGTACTCATCTGACCCTTCTTCTAATGGTGTCCCCTATACTGCTCCTGCCGCCATCGCTGTCGTGCCGGATATTCCGGATTCCTCAAGGGGTAGCCACAAAGTTCTTAAGTTATCATTACATGAACAGAGTTTCCCTTCACCACCAGGAACAACAAATGCAATTCAAGATGGTGTCACAATTGTAACAACTAATGACATAGCAGATAATGTGATTCCTACAACAACAAATGTGGTGACAAATAATGTCATTGCTGAAGATCTCAACATGCATTCTTCCTCAATCGAGGATGCTATTGACCTTGACCAAACAGCCTCACCAGCAGATGTGGATACTAATTAA 1125 0.4756 MEQQNPQQPSNPILDHTSSFNNNTIVPNEAKVAAMTDSGGSDSVSRPEAGGWEQHHGVVVVKRGRGRPRKYFDTDGSGGGMMTSLTSEPPPSGFAEAVASPLESPAVKRGRGRPRGSGKLQILASIGGFVVETAGGSFTPHVMIVGTGEDVVSRILSFFQKGPRAVCILSATGSVSSVVIRQPGGLLRYEGRFEILSLSGSCTYTNGNGNAYRKDGMLSVSLAKPDGRVFGGGIENSLIAAAPIQLVLATFKQNISNQIKKRYSSDPSSNGVPYTAPAAIAVVPDIPDSSRGSHKVLKLSLHEQSFPSPPGTTNAIQDGVTIVTTNDIADNVIPTTTNVVTNNVIAEDLNMHSSSIEDAIDLDQTASPADVDTN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00077 374 SMART AT_hook_2 62 74 IPR017956 GO:0003677
Arst3g00077 374 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Arst3g00077 374 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 252 IPR005175 -
Arst3g00077 374 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 255 - -
Arst3g00077 374 MobiDBLite consensus disorder prediction 1 29 - -
Arst3g00077 374 CDD DUF296 139 251 IPR005175 -
Arst3g00077 374 MobiDBLite consensus disorder prediction 1 50 - -
Arst3g00077 374 Gene3D - 140 266 - -
Arst3g00077 374 ProSiteProfiles PPC domain profile profile. 135 278 IPR005175 -
Arst3g00077 374 Pfam AT hook motif 62 73 IPR017956 GO:0003677
Arst3g00077 374 Pfam AT hook motif 108 118 IPR017956 GO:0003677
Arst3g00077 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 288 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00077 Arst-Chr3 524767 533222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00077 60 297 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 40.486 1.30e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00077 - - aip:107632385 667.922