Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00055 ATGAACGGCGATGCCCGGAGACGCGACCGGAGGGACAACCCCAGGAGGTCGAAGAAGCAGAAGCTGATTTGCAGTGCAGAGGAAGAACTTGAGGCCAGATTAGGGTTCGATCTCTTCTCTGAGGGTGAAAAGCGTCTTGGATGGTTGCTCAATTTTGCATCTTCTTCTTGTGAGGATGAAGAGACCCACAAAGTCTACAGTTGCGTCGATCTTTACTTTGTTACACAGGATGGATCTTCCTTCAAGACTAAATACAGATTTCGTCCTTATTTCTACGCAGCTACAAAGAATAAAATGGAGATGGATGTTGAAGCATACCTGAGGCGCCGTTATGAAACTCAGATTGCAGACATTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAATCATTTGTCTGGCTTAAGAAAACCTTATCTAAAGCTATCATTTGATACCGTGCAACAATTGATGACTGTAAAGAGTGACCTGATGCATGTTGTTGAAAGAAATCAGGCAAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTGACTGAAAGAAGAGAACAAAAACCACAGGACTTTATAGATTGCATAATTGATCTCCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGCTCTGGCCAGTGGTATGATGTTTGCGTGTCCAGTACTGGGGTTACACTTGAGAAGAGAACAGATCTTCTGCAGCGCGCCGAAGTTCGTGTTTGTGCATTTGACATTGAGACCACAAAACTTCCACTCAAATTTCCTGACGCTGACTATGATTTGATTATGATGATTTCATACATGGTAGATGGGCAAGGGTATTTAATCACAAATAGAGAGTGTGTTGGTGATGACATAGAGGATTTAGAGTACACTCCTAAACCAGAGTTTGAAGGCTGTTTTAAGGTTACAAATGTTCAAAATGAGATTGAACTTCTTAGATTATGGTTTTCTCACATGCAAGAGGTGAAACCTGGTATTTATGTGACGTATAATGGTGATTTTTTTGATTGGCCATTCCTTGAGAAAAGGACAGAACATCATGGGTTCAAAATGAGTGAGGAATTGGGGTTTCAGTGTGACAAGAATCAAGGGGAATGTCGTGCTAAATATGCTTGTCATTTAGATTGTTTTGCTTGGGTTAAACGGGACAGTTATCTCCCTCAAGGAAGCCAAGGCCTAAAGGCGGTTACAAAAGCAAAGTTGGGTTATGATCCCTTGGAGGTGAACCCTGAGGATATGGTTTGCTTTGCAAAGGAAAAGCCTCAGACAATGGCTTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCCCTTGCTACTATTATACCCATGTCACCAGATGAAGTCTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTCATGGTTCAGGCATACAAAGCGAATGTTATATCTCCTAACAAACACCAATCCGACCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACATACATAGGTGGCCATGTAGAATGCCTAGAAAGTGGTGTTTTCAGGTCTGATATTCCAACTAGTTTTACACTAGAGTCATCTGCCTATGAGCAATTGATCAACAATCTTGATAGAGATCTACAGTATGCTATAAGAGTAGAGGGTAAAATGGATTTGGAATCAGTCTCTAATTATGATGAAGTAAAGAATGCCATCATGGAAAAGCTTTCAAAATTACGAGATGTTCCAATACGTGAAGAATGCCCCCTCATTTATCATCTAGATGTAGCTGCTATGTATCCAAACATAATTTTGACAAATCGACTTCAGCCGCCGTCAATTGTTTCAGATGAGGTTTGCACTGCATGTGATTTCAACCGTCCTGGAAAGACATGTCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATCATATAAAGAAACAGATTGAGTCCGATTTTGTTGATGGTTCTAACGTGAGGTTATCAAAATCTTTTCTTGACCTGCCCAAGGCAGAGCAACAATCAAGGCTGAAAGACCGTTTAAAGAAATACTGCCAGAAGGCATACAAGCGTGTTCTTAACAAACCAGTTACAGAACTCCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGAGATAGAAGATATGAATATAAAGGTCTTAACAAGGTTTGGAAAGGAAAACTGTCAGAAGCCAAGGGGAGTGGAAATCCTATGAAGATCCAGGAAGCACAAGACATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTTATGCGCAAGGGTGCTAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATATACAGGAGCAAAAATAATTCAGAATGCCCGCTTGCTGGTAGACAAAATAGGGAAACCACTTGAACTAGATACTGATGGTATCTGGTGTGCACTTCCTGGGTCTTTTCCAGAAAATTTTACTTTTAAAACAAAAGATTCGAAAAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTAAATGTTGATGTGGCAATCAATAATACAAATGATCAGTACCAGACACTCACAGATCCAATAAGGAAAACATATACTACTCGTAGCGAATGCTCTATAGAATTTGAGGTGGATGGACCATACAAGGCAATGATTCTTCCTGCTTCCAAAGAAGAAGGAATTTTAATTAAAAAACGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGAAGAGGTGAACTGAAACTAATAAAAGTTTTCCAGGCTGAGCTATTTGACAAGTTTCTCCATGGCTCAACCTTAGATGAATGCTATTCAGCTGTTGCTGCTGTGGCAAATCGCTGGCTTGATCTTCTTGATAACCAAGGGAAGGATATTACAGACAGTGAGTTGCTTGATTACATCTCAGAATCAAGTACCATGAGCAAGTCATTAGCTGATTATGGTGAGCAAAAATCTTGTGCTGTCACCACTGCCAAACGTCTTGCCGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGCGAGCGTGCTATTCCTGTTGCAATATTTGAAACAAAAGCTGAAGTAATGAAGTACTATGTTCGAAGATGGTGCAAGGCCTCATCAGATGTTGGCATTCGGTCCATAGTTGACTGGTCCTACTACAAGCAGCGGCTTTCTTCAGCGATTCAAAAAATTGTCACAATTCCCGCTGCCATGCAAAAGATTGCAAATCCTGTTCCTCGGGTAGCTCATCCGGATTGGTTGCATAAGAAAGTTCGTGAAAAAGAGGACAAGTTTCGTCAACGAAAATTAGTTGATGTCTTTAACTCATTTAAAAGGGATGATCGCTCAAAAAGGAATAGTGATTCTAATGGTGTCAGCCTTATGGCTGATGAAGAGACTGTGATTGACTTGGAGGATTTTGGAAACAAGGCCAGGAATTTGCCAATTGGTCCTAGACCAATTATACGGCATTATAAAGCTAATAATGAAGGGAATTCAATTAAGCTCAGTGGTCATGGAAATTCTGAGCAACAACATATTGATAATAGCAGCAAGGACGAGTCACTTTCACTTTTTCAACAAAAGGAAATATCATCTGAAAATGTTGACAGAAATGTTGATTATCAAGGATGGCTTGAAATAAAGAAGAGAAAGTGGAAAAGTATCCTGGAAAAGAGAAAAAAGCGAAGATTGGAGAATTCAAAGAAAGCTGATAGGATGAATGGTGTTCCTGAACAAATGAATGGTACAACTGGTAGAACAAATGTCAGTTCATATTTTAGAACGAATGAAGTAGCCCTGAAGCGGTACCATTGGCAGATAATACAACTACTTCAGAGCTCACAGATTGGCCAATTTTTTGCCTGGGTAGTTGTTGATGGGATTATGCTAAAGATTCCTGTTTCGGTTCCTAGAGTCTTTTACCTCAACTCAAGATCACCAGTTACTGAAGAATTTCTTGGCAAAAGCGTCAAGAAGACACTTCCTCATGGAAAGCAAAGTTATAATCTGTATGAGGTTTCAATTGACGAAGTTCAATTTAAGGAAGCAAGCAAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACTAAGGTGCCACTGGAGTTTAATGCTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGATAAAAGTGCCAAACAAAGAAGTCTACAAGACTCATGGAATTTGAGTGAATTGCACATGAAGACCACAACCGAATGTTCTTATCTCGAACAATTGATATCCTTTTTTTACTTGTATCATAGTATCTCTGAGGGACGGGCTATATACGTTGGATATTTTCCAGCATCAAAATCAATAACAGTTGTGGTAGTTAATTCATATCAAAACAAGGATTTATCACTGGCTTATCTTGAAAGACAGTTTCACGATGCATGCCAAGCTTTGTCTATTCAGCCACCTCCCCGGAATAGCATTAGTTTTAAGGTGGACTATGTTTCACATGTCAAGGATGCTGAAACTTTGATGCAAAGAGCAATAAATGATCGCAGGAATGAATATCATGGACCTATGGTTGCTATCATTGAATGCCCAAATGTTCAACTTTTGAAATTGGGTATTCGATCGCTAGATGATTTTCCATGCCTGAGTATTCCTTGTAATGCCCGTGATAGTCAATATCAGATTCTTGGATGGCAACAAGTTGCTGGAAAAATTGGAATGCAACGTTGTGCTGCATCAGGCCAATGGCTAAATGAGAGAATTGCTCTCTCAAGATATGCCCATGTACCACTTGGGAATTTTGAACTTGACTGGCTTATATTTACAGCAGATACCTTCTTCTCAAGAGCTTTGCGTGATAGTCAACAGGTACTTTGGATATCGGATGGCGGTCTTCCTGATTTAGGTGGCATTAATGATGAAGAGACCTGTTTTCTTGACGAGGTCCACCAACCTGTTCTTACATATCCTGGAGCTTACAGAAAAGTTACTGTTGAGTTAAAGATACACCACCTAGCTGTGGATGCCCTTTTAAAAAGCAACCAAGTCAATGAAATGGAAGGAGGTGCTTTATTAGGATTCGATAATGAATTTAATTCTGGAGCTAATCCCGCTATTGATCAGAGTGGCTTTGATGAGGCTGCCTCATGTACACATGCCTTTCGAGTCCTGAAACAATTGATTCAGCGGTGCCTTGCAGATGCAGTTACATCTCAAAACACATATGCGGATGCAATGTTGCAACATCTGTATCGATGGCTTTGCAGCCCTCAGTCAAAACTTCACGATCCAGCTCTTCACCAGCTACTTCACAAGGTCATGCAAAAAGTGTTTGCACTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTATTTGCAAACTTCTCAAAGATTATTATCGACACAGGGAAATATGATCTTGCTGCAGCCAAGGCTTACTGTGACAGTTTGTTAAGAACTATACAGTCTAGAGACTTATTTGAATGGATTGAGTTGGAACCACTTCAGTTTTGGCGGTCATTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAGCAAAATCAGATGAATCTCAAGTTGACATTATATCAAGCTGGAATATTGCTGAGTACTTGCCAAAGAAAATCCAGGATCATTTCATTGTCATTGTTTCTCAATTCTTGTATATTCCTTGGAGCTATGCACAAAAGCAAGCAGGAATCAGGGAATCAATGCTGAATGGTGATTCCTGCACCCCATCGATTAACATTGGAGCTGCAGAGGCTTTGGAATCAGAAATGATAGAATATATCAAAGAACAGATTAGCTCTTACTTCACGGACAATCTTTTGCGAATTGTTCGTGATATTGTTCTTCACATGAAAGGGGCAAGCAAATCAGAAGATGACCCAAGTACATCATCTGGCCTTCCTCAAATTGTGGGTGATCAACATAGAGGGGATGCTTCCTTGGAATTTATCAAGCATGTCTGTGCTGTGTTGGCCCTCGACCATGCTGCAGCTATTCATGTCATGAGAAAGAATTTGTTAAAATATGTTCGTGTTAGGGAGTTTGCTCCGGAAGCTGAGTTTCGTGATCCATGTCATTCCTTCATCCTATCCAATGTCATTTGCAGCTATTGTAATGACTGCAGAGACTTGGACTTGTGCCGTGACTCGGCTTTATTGACTCAGGAGTGGCGTTGTGCGGTGCCACAGTGTGGCCAGCCTTATGACCGCGAGGTGATGGAGAATGCGCTTCTTCAGATCGTACGACAAAGAGAGCGGCTTTACCACCTTCAAGATCTGGTGTGCCTCAGGTGCAACCAGGTCAAAGCTGCACATTTGTCTGAGCAGTGTGCTTGTGCTGGCTCATTTAGGTGCAAGGAAGACGTTACTGAATTTCGCTCAAAGATGCAGGTTTTCTTCAACATAGCTTTTCGTCAGAAATTCCAACTTCTCCAGGAATGTACCTCTTGGATTTTAGAACTTAGATTGTAA 6618 0.4059 MNGDARRRDRRDNPRRSKKQKLICSAEEELEARLGFDLFSEGEKRLGWLLNFASSSCEDEETHKVYSCVDLYFVTQDGSSFKTKYRFRPYFYAATKNKMEMDVEAYLRRRYETQIADIEIIEKEDLDLKNHLSGLRKPYLKLSFDTVQQLMTVKSDLMHVVERNQAKSDAAEAYESILTERREQKPQDFIDCIIDLREYDVPYHVRFAIDNDIRSGQWYDVCVSSTGVTLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLITNRECVGDDIEDLEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLEKRTEHHGFKMSEELGFQCDKNQGECRAKYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVCFAKEKPQTMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVISPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPTSFTLESSAYEQLINNLDRDLQYAIRVEGKMDLESVSNYDEVKNAIMEKLSKLRDVPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVSDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYHIKKQIESDFVDGSNVRLSKSFLDLPKAEQQSRLKDRLKKYCQKAYKRVLNKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKGSGNPMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVDKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLDECYSAVAAVANRWLDLLDNQGKDITDSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETKAEVMKYYVRRWCKASSDVGIRSIVDWSYYKQRLSSAIQKIVTIPAAMQKIANPVPRVAHPDWLHKKVREKEDKFRQRKLVDVFNSFKRDDRSKRNSDSNGVSLMADEETVIDLEDFGNKARNLPIGPRPIIRHYKANNEGNSIKLSGHGNSEQQHIDNSSKDESLSLFQQKEISSENVDRNVDYQGWLEIKKRKWKSILEKRKKRRLENSKKADRMNGVPEQMNGTTGRTNVSSYFRTNEVALKRYHWQIIQLLQSSQIGQFFAWVVVDGIMLKIPVSVPRVFYLNSRSPVTEEFLGKSVKKTLPHGKQSYNLYEVSIDEVQFKEASKKLAALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKSAKQRSLQDSWNLSELHMKTTTECSYLEQLISFFYLYHSISEGRAIYVGYFPASKSITVVVVNSYQNKDLSLAYLERQFHDACQALSIQPPPRNSISFKVDYVSHVKDAETLMQRAINDRRNEYHGPMVAIIECPNVQLLKLGIRSLDDFPCLSIPCNARDSQYQILGWQQVAGKIGMQRCAASGQWLNERIALSRYAHVPLGNFELDWLIFTADTFFSRALRDSQQVLWISDGGLPDLGGINDEETCFLDEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKSNQVNEMEGGALLGFDNEFNSGANPAIDQSGFDEAASCTHAFRVLKQLIQRCLADAVTSQNTYADAMLQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLAAAKAYCDSLLRTIQSRDLFEWIELEPLQFWRSLLFMDQYNYGGIPAKSDESQVDIISSWNIAEYLPKKIQDHFIVIVSQFLYIPWSYAQKQAGIRESMLNGDSCTPSINIGAAEALESEMIEYIKEQISSYFTDNLLRIVRDIVLHMKGASKSEDDPSTSSGLPQIVGDQHRGDASLEFIKHVCAVLALDHAAAIHVMRKNLLKYVRVREFAPEAEFRDPCHSFILSNVICSYCNDCRDLDLCRDSALLTQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCNQVKAAHLSEQCACAGSFRCKEDVTEFRSKMQVFFNIAFRQKFQLLQECTSWILELRL 2205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00055 2205 SUPERFAMILY Ribonuclease H-like 65 468 IPR012337 -
Arst3g00055 2205 Gene3D - 239 469 IPR036397 GO:0003676
Arst3g00055 2205 MobiDBLite consensus disorder prediction 1 20 - -
Arst3g00055 2205 SMART polmehr3 240 843 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst3g00055 2205 Pfam DNA polymerase family B 762 1067 IPR006134 GO:0000166|GO:0003677
Arst3g00055 2205 Pfam DNA polymerase family B, exonuclease domain 75 401 IPR006133 -
Arst3g00055 2205 Gene3D DNA Polymerase, chain B, domain 1 56 232 - -
Arst3g00055 2205 CDD DNA_polB_epsilon_exo 241 444 - -
Arst3g00055 2205 CDD POLBc_epsilon 504 1123 - -
Arst3g00055 2205 Gene3D - 942 1126 IPR042087 -
Arst3g00055 2205 MobiDBLite consensus disorder prediction 1280 1305 - -
Arst3g00055 2205 MobiDBLite consensus disorder prediction 1215 1237 - -
Arst3g00055 2205 FunFam DNA polymerase epsilon catalytic subunit 57 228 - -
Arst3g00055 2205 Gene3D Palm domain of DNA polymerase 753 938 IPR023211 -
Arst3g00055 2205 FunFam DNA polymerase epsilon catalytic subunit 759 938 - -
Arst3g00055 2205 Pfam Domain of unknown function (DUF1744) 1531 1897 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Arst3g00055 2205 SMART DUF1744_2 1513 1897 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Arst3g00055 2205 SUPERFAMILY DNA/RNA polymerases 487 1115 IPR043502 -
Arst3g00055 2205 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 17 2202 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Arst3g00055 2205 FunFam DNA polymerase epsilon catalytic subunit 942 1126 - -
Arst3g00055 2205 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 17 2202 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Arst3g00055 2205 FunFam DNA polymerase epsilon catalytic subunit 241 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00055 Arst-Chr3 394437 415203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00055 5 2201 Core DNA Replication Machinery Family AT2G27120 67.922 0.0 3053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00055 K02324 - gmx:100812003 3725.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00055 3 394437 415203 Arst3g00055 3 394437 415203 ECH