Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00046 ATGTATAGTAATTTCAAGGAGCAAGCGATAGAGTACGTGAAGCAAGCGGTGCAGGAGGACAACAATGGCAACTATGCCAAGGCCTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACCCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCTATCACGCAGAAATTCACCGAGTACCTTCGTCGTGCCGAGGAGATCCGTGCTGTTCTTGACGACGGTGGGCCTGGGCCTGCCTCCAACGGGGACGCGGCCGTTGCCACCAGGCCCAAGACCAAGCCCAAGGACGGAGAAGGAGGCAGCGGAGGTGGGGACGGGGAGGATCCCGAGCAGGCCAAGCTGAGGGCGGGTTTGAACTCTGCCATCATTAGGGAGAAGCCTAACGTCAAGTGGAATGACGTGGCGGGTTTGGAGAGCGCCAAGCAGGCGTTGCAGGAGGCGGTTATCTTGCCCGTTAAGTTTCCTCAATTCTTCACTGGTAAAAGACGGCCTTGGAGAGCTTTTTTGTTGTACGGACCCCCCGGAACTGGTAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCTACATTTTTCAGTGTTTCTTCATCGGACTTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTAGTTTCAAATCTTTTCCAAATGGCCCGGGATAGTGCACCTTCTATCATATTTGTTGATGAAATAGATTCGCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGTATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACGAATACACCTTATGCTCTTGACCAGGCCATAAGGCGGCGTTTTGATAAGCGTATATACATTCCACTACCAGATTTGAAAGCCCGCCAACACATGTTCAAGGTGCATCTAGGAGATACACCTCATAACTTGACCGAGAGTGATTTTGAACACTTGGCACGCAAGACAGAGGGATTTTCAGGTTCAGATATATCTGTTTGTGTGAAGGATGTTTTATTTGAACCCGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGGATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGTGCAATACAAATCACAATGCAAGACCTTGCCGCAAAAGGACTTGCTGCTAAGATCCTTCCGCCACCTATATCGAGAACAGATTTTGACAAGGTGCTTGCTAGACAAAGGCCTACTGTAAGCAAAGCTGATCTCGACGTACATGAGAGATTCACAAAGGAGTTTGGAGAGGAGGGTTAA 1314 0.4855 MYSNFKEQAIEYVKQAVQEDNNGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGGSGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDSAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKDPEGMWIPCGPKQQGAIQITMQDLAAKGLAAKILPPPISRTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00046 437 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Arst3g00046 437 Gene3D - 6 75 - -
Arst3g00046 437 MobiDBLite consensus disorder prediction 73 113 - -
Arst3g00046 437 Gene3D - 129 425 IPR027417 -
Arst3g00046 437 MobiDBLite consensus disorder prediction 91 113 - -
Arst3g00046 437 FunFam vacuolar protein sorting-associated protein 4A 302 417 - -
Arst3g00046 437 Gene3D - 302 417 - -
Arst3g00046 437 Pfam Vps4 C terminal oligomerisation domain 370 434 IPR015415 -
Arst3g00046 437 Pfam ATPase family associated with various cellular activities (AAA) 171 300 IPR003959 GO:0005524|GO:0016887
Arst3g00046 437 SUPERFAMILY MIT domain 2 81 IPR036181 -
Arst3g00046 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 433 IPR027417 -
Arst3g00046 437 PANTHER AAA DOMAIN-CONTAINING 15 435 - -
Arst3g00046 437 FunFam Vacuolar protein sorting-associated protein 4 129 309 - -
Arst3g00046 437 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Arst3g00046 437 CDD MIT_VPS4 4 77 IPR045253 -
Arst3g00046 437 CDD RecA-like_VPS4 128 298 - -
Arst3g00046 437 SMART AAA_5 166 302 IPR003593 GO:0016887
Arst3g00046 437 ProSitePatterns AAA-protein family signature. 272 291 IPR003960 GO:0005524|GO:0016887
Arst3g00046 437 SMART smart 2 79 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00046 Arst-Chr3 326472 330072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00046 165 358 Calmodulin-binding Proteins AT3G56690 36.735 1.27e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00046 K12196 - gmx:100788150 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00046 3 326472 330072 Arst3g00046 3 326472 330072 ECH
Arst8g02003 8 28726607 28731146 Arst3g00046 3 326472 330072 PCT