Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00022 ATGCCACGGGGAAAGGCAAATTCTTCATCAGTTGCTAAGCCATCCGAGCCTGAAAATCCAGCTGAATCTGATGAAAAGATCGATTTTGATGATGCAAATGATGCTGAGGAAACAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAAATAGAAGAGGTGGAAGAAGAGGAAGAGGATCCGGAGGAGGTTGAGGTGATGGAGGAGGAAGAGGAGGAAGAGGATCCGGAGGAGGTTGAGGTGGTGGAGGAGGAAGAGGAGGAAGAGGATCCGGAGGAGGTGGAAGAGGTTGAAGAAATGGAAGAAGATAATAGCATGCAAAACAGTAGCAAGGCAGAAGATAAGGATGAGAAGAAAAAGCATGCTGATCTTCTATCTCTTCCTCCTCATGGGTCTGAAGTATATATTGGTGATATTCCACTTGATGCCTCGACTGAGGATTTGAAAGCATTTTGTGAGTCTATTGGGGAAGTTGCAGAGGTTCGTGTAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGATTTGGTTTTGTGACATTTAAAAGTGTGGAATTGGCTTCTAAAGCCATCAAGGAGCTGAACAGTAAAGCATTTAAGGGTAGAAAAATAAAATGTTCAACAGCTCAAGCAAAACACCGTCTTTTTATTGGCAATGTTCCCAGAAACTGGGGTGATGAAGATCTCAGGAAGGTTGTATCTGATGTTGCACCTGGAGTTACTGGTTTAGAACTAGTCAAGGATATGAAGAACACTAAAAATAACCGTGGATTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAATATTCAAGACAAAAGATGATGAGCTCAACATTTAAGCTAGGTGACAATGCTCCAACGGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTGAGGGCAGTATATGTGAAGAACTTGCCTAGGAATGTAACTCAGGAGCAGATGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCACCAAAGTCTGGGCAGGAAAAGAATAGAATAGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGAAGGTCAAATTTTGAACTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACTTGCAGAAGCCAGGATTGCTTCCAAGCTATTCCCCACATGTTGGTTACGGTTTGGTTGGTGCCCTTGGCGCGGGATATGGTTCCCCAGGTTTTGCACAGATGCCCTCAATGTATGGAAGGCAACATTCAGGTCAGGGAGTGCACTCACGAACACCACCCTTCTTTCAGAGAGGTGGCTGGGGTGGTGGTGGTGGGAGTGAAGGCACAATAATAATAGTAGCCAGGGGCATAGATACCGCCCATATTAG 1448 0.4344 MPRGKANSSSVAKPSEPENPAESDEKIDFDDANDAEETMEEEIEYEEVEEEEEVEEIEEVEEEEEDPEEVEVMEEEEEEEDPEEVEVVEEEEEEEDPEEVEEVEEMEEDNSMQNSSKAEDKDEKKKHADLLSLPPHGSEVYIGDIPLDASTEDLKAFCESIGEVAEVRVMKGKDSSENKGFGFVTFKSVELASKAIKELNSKAFKGRKIKCSTAQAKHRLFIGNVPRNWGDEDLRKVVSDVAPGVTGLELVKDMKNTKNNRGFAFIDYYNHACAEYSRQKMMSSTFKLGDNAPTVSWADPKNADSSASSQVRAVYVKNLPRNVTQEQMKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQILNCSLAKPQADQKSGGSNLQKPGLLPSYSPHVGYGLVGALGAGYGSPGFAQMPSMYGRGAPAEISMMPMLLADGRIGYVLQHSGQGVHSRTPPFFQRGGWGGGGGSSSRNASSSSKGRHNNNSSQGHRYRPY 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00022 514 Coils Coil 73 93 - -
Arst3g00022 514 MobiDBLite consensus disorder prediction 1 133 - -
Arst3g00022 514 SUPERFAMILY RNA-binding domain, RBD 135 304 IPR035979 GO:0003676
Arst3g00022 514 SUPERFAMILY RNA-binding domain, RBD 305 411 IPR035979 GO:0003676
Arst3g00022 514 Gene3D - 219 299 IPR012677 -
Arst3g00022 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 300 IPR000504 GO:0003723
Arst3g00022 514 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 301 409 - -
Arst3g00022 514 Coils Coil 38 66 - -
Arst3g00022 514 MobiDBLite consensus disorder prediction 485 514 - -
Arst3g00022 514 MobiDBLite consensus disorder prediction 110 132 - -
Arst3g00022 514 Gene3D - 94 218 IPR012677 -
Arst3g00022 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Arst3g00022 514 SMART rrm2_1 313 386 IPR003954 GO:0003676
Arst3g00022 514 SMART rrm2_1 139 212 IPR003954 GO:0003676
Arst3g00022 514 MobiDBLite consensus disorder prediction 23 109 - -
Arst3g00022 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 390 IPR000504 GO:0003723
Arst3g00022 514 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 219 299 - -
Arst3g00022 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 286 IPR000504 GO:0003723
Arst3g00022 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 381 IPR000504 GO:0003723
Arst3g00022 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Arst3g00022 514 SMART rrm1_1 219 296 IPR000504 GO:0003723
Arst3g00022 514 SMART rrm1_1 139 212 IPR000504 GO:0003723
Arst3g00022 514 SMART rrm1_1 313 386 IPR000504 GO:0003723
Arst3g00022 514 MobiDBLite consensus disorder prediction 469 514 - -
Arst3g00022 514 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 10 502 - -
Arst3g00022 514 Gene3D - 301 410 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00022 Arst-Chr3 205646 209984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00022 160 452 Eukaryotic Initiation Factors Gene Family AT4G34110 24.855 1.26e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00022 K13161 - gmx:100806658 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00022 3 205646 209984 Arst3g00022 3 205646 209984 ECH