Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00010 ATGGGAGCAGCTAATAATCCTTTTCAGACCCCTAAATCTGGAAAAATAGGGAAGGGTGGCAAATCCTCCAGGCTTACCAAATGCAACAGATCTGGACCTCAAACCCCAGGTCCAAATATTGCAGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGCTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAGAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGGATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAGTTTACAGGCAGAAGTTGAAAACCTTACCATGAAGGAGTGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTAAGTGACCTTAGTGAAAATGAAAATAGTGAAAAATTGCTTTTCGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTGGAGGTTTCAGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACCATGGGCCCAATAGATGTTTACCTTGTTAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGCAGATGTTGCACCCGAATTTCAACCGACTCCAGAATTTAAAAACCATGAACCAACTGTGGTTGTAGAGGATAACGGGAGAGACATTGCAGTGCAGGGACAAGATGGTCAAATACCTAGTTCTGATTTTACTTCTACACAAGACTTTGTGAGTGGGATCGTGAAAATTGTTCCTTCAGATGTTGATAGCCATGCTGACTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGTGTCCAATGGAATGAACTGGGTACTCTTCAAGATGATTTTTGTACAACTCGCGAGCATGCTATAACTCTAACACATACTTCGAATGTAAATGAAGCATCTACTGCAGCATCAAACCCTGCTGGGGGCTGA 1131 0.4156 MGAANNPFQTPKSGKIGKGGKSSRLTKCNRSGPQTPGPNIAGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSSLQAEVENLTMKECRLDEQIREMQERLSDLSENENSEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVSDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGADVAPEFQPTPEFKNHEPTVVVEDNGRDIAVQGQDGQIPSSDFTSTQDFVSGIVKIVPSDVDSHADYWLLSDADVSITDMWRTESGVQWNELGTLQDDFCTTREHAITLTHTSNVNEASTAASNPAGG 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00010 376 MobiDBLite consensus disorder prediction 24 47 - -
Arst3g00010 376 MobiDBLite consensus disorder prediction 1 47 - -
Arst3g00010 376 CDD E2F_DD 132 238 IPR032198 GO:0046983
Arst3g00010 376 Pfam E2F/DP family winged-helix DNA-binding domain 58 121 IPR003316 GO:0005667|GO:0006355
Arst3g00010 376 Coils Coil 72 92 - -
Arst3g00010 376 SMART E2F_TDP_2 56 121 IPR003316 GO:0005667|GO:0006355
Arst3g00010 376 Pfam E2F transcription factor CC-MB domain 137 237 IPR032198 GO:0046983
Arst3g00010 376 Gene3D - 129 238 - -
Arst3g00010 376 PANTHER TRANSCRIPTION FACTOR E2F 7 333 IPR015633 GO:0000978|GO:0006357
Arst3g00010 376 Gene3D - 51 123 IPR036388 -
Arst3g00010 376 FunFam E2F transcription factor 1 50 123 - -
Arst3g00010 376 SUPERFAMILY "Winged helix" DNA-binding domain 56 119 IPR036390 -
Arst3g00010 376 SUPERFAMILY E2F-DP heterodimerization region 134 238 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00010 Arst-Chr3 72369 77142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00010 8 375 E2F-DP Transcription Factor Family AT5G22220 60.000 2.36e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst3g00010 E2F_CC-MB 6.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00010 K06620 - gmx:100819817 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00010 3 72369 77142 Arst3g00010 3 72369 77142 ECH