Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00009 ATGTCGGGCACCAGAGCTCCTCCCGCCGCTGCTAGCCCATCGGAGCAGATCATGCGGCGCCAACTTCCCCTCTCCACCATGAAGCCGCCCTTTGCCGCCTCCGTTGATTACCACCGCTTTGCCCCCGACCACCTCCACCACAATCGCCGAACTGTTGACCACGAACCCGAAGCCATCGTTGTTAAGTCTTCCCAATTGAAGCGGAAGAGTAACACAACAGATTTTGAAGCTGATTCTGGTGATAGGGTGAATCATGTATCCATGGGAGCAGCTAATAATCCTTTTCAGACCCCTAAATCTGGAAAAATAGGGAAGGGTGGCAAATCCTCCAGGCTTACCAAATGCAACAGATCTGGACCTCAAACCCCAGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGCTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAGAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGGATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAGTTTACAGGCAGAAGTTGAAAACCTTACCATGAAGGAGTGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTAAGTGACCTTAGTGAAAATGAAAATAGTGAAAAATTGCTTTTCGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTGGAGGTTTCAGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACCATGGGCCCAATAGATGTTTACCTTGTTAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGCAGATGTTGCACCCGAATTTCAACCGACTCCAGAATTTAAAAACCATGAACCAACTGTGGTTGTAGAGGATAACGGGAGAGACATTGCAGTGCAGGGACAAGATGGTCAAATACCTAGTTCTGATTTTACTTCTACACAAGACTTTGTGAGTGGGATCGTGAAAATTGTTCCTTCAGATGTTGATAGCCATGCTGACTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGTGTCCAATGGAATGAACTGGGTACTCTTCAAGATGATTTTTGTACAACTCGCGAGCATGCTATAACTCTAACACATACTTCGAATGTAAATGAAGCATCTACTGCAGCATCAAACCCTGCTGGGGGCTGA 1377 0.443 MSGTRAPPAAASPSEQIMRRQLPLSTMKPPFAASVDYHRFAPDHLHHNRRTVDHEPEAIVVKSSQLKRKSNTTDFEADSGDRVNHVSMGAANNPFQTPKSGKIGKGGKSSRLTKCNRSGPQTPGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSSLQAEVENLTMKECRLDEQIREMQERLSDLSENENSEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVSDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGADVAPEFQPTPEFKNHEPTVVVEDNGRDIAVQGQDGQIPSSDFTSTQDFVSGIVKIVPSDVDSHADYWLLSDADVSITDMWRTESGVQWNELGTLQDDFCTTREHAITLTHTSNVNEASTAASNPAGG 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00009 458 FunFam E2F transcription factor 1 132 205 - -
Arst3g00009 458 PANTHER TRANSCRIPTION FACTOR E2F 86 415 IPR015633 GO:0000978|GO:0006357
Arst3g00009 458 MobiDBLite consensus disorder prediction 63 134 - -
Arst3g00009 458 Gene3D - 211 320 - -
Arst3g00009 458 Pfam E2F transcription factor CC-MB domain 219 319 IPR032198 GO:0046983
Arst3g00009 458 SUPERFAMILY E2F-DP heterodimerization region 216 320 IPR037241 -
Arst3g00009 458 Gene3D - 133 205 IPR036388 -
Arst3g00009 458 SMART E2F_TDP_2 138 203 IPR003316 GO:0005667|GO:0006355
Arst3g00009 458 SUPERFAMILY "Winged helix" DNA-binding domain 138 201 IPR036390 -
Arst3g00009 458 Pfam E2F/DP family winged-helix DNA-binding domain 140 203 IPR003316 GO:0005667|GO:0006355
Arst3g00009 458 CDD E2F_DD 214 320 IPR032198 GO:0046983
Arst3g00009 458 Coils Coil 154 174 - -
Arst3g00009 458 MobiDBLite consensus disorder prediction 111 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00009 Arst-Chr3 72122 77142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00009 19 457 E2F-DP Transcription Factor Family AT5G22220 55.032 1.45e-149 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst3g00009 E2F_CC-MB 8.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00009 K06620 - gmx:100819817 676.781