Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00008 ATGTCGGGCACCAGAGCTCCTCCCGCCGCTGCTAGCCCATCGGAGCAGATCATGCGGCGCCAACTTCCCCTCTCCACCATGAAGCCGCCCTTTGCCGCCTCCGTTGATTACCACCGCTTTGCCCCCGACCACCTCCACCACAATCGCCGAACTGTTGACCACGAACCCGAAGCCATCGTTGTTAAGTCTTCCCAATTGAAGCGGAAGAGTAACACAACAGATTTTGAAGCTGATTCTGGTGATAGGGTGAATCATGTATCCATGGGAGCAGCTAATAATCCTTTTCAGACCCCTAAATCTGGAAAAATAGGGAAGGGTGGCAAATCCTCCAGGCTTACCAAATGCAACAGATCTGGACCTCAAACCCCAGGTCCAAATATTGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGCTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAGAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGGATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAGTTTACAGGCAGAAGTTGAAAACCTTACCATGAAGGAGTGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTAAGTGACCTTAGTGAAAATGAAAATAGTGAAAAATTGCTTTTCGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTGGAGGTTTCAGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACCATGGGCCCAATAGATGTTTACCTTGTTAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGCAGATGTTGCACCCGAATTTCAACCGACTCCAGAATTTAAAAACCATGAACCAACTGTGGTTGTAGAGGATAACGGGAGAGACATTGCAGTGCAGGGACAAGATGGTCAAATACCTAGTTCTGATTTTACTTCTACACAAGACTTTGTGAGTGGGATCGTGAAAATTGTTCCTTCAGATGTTGATAGCCATGCTGACTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGTGTCCAATGGAATGAACTGGGTACTCTTCAAGATGATTTTTGTACAACTCGCGAGCATGCTATAACTCTAACACATACTTCGAATGTAAATGAAGCATCTACTGCAGCATCAAACCCTGCTGGGGGCTGA 1389 0.442 MSGTRAPPAAASPSEQIMRRQLPLSTMKPPFAASVDYHRFAPDHLHHNRRTVDHEPEAIVVKSSQLKRKSNTTDFEADSGDRVNHVSMGAANNPFQTPKSGKIGKGGKSSRLTKCNRSGPQTPGPNIGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSSLQAEVENLTMKECRLDEQIREMQERLSDLSENENSEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVSDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGADVAPEFQPTPEFKNHEPTVVVEDNGRDIAVQGQDGQIPSSDFTSTQDFVSGIVKIVPSDVDSHADYWLLSDADVSITDMWRTESGVQWNELGTLQDDFCTTREHAITLTHTSNVNEASTAASNPAGG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00008 462 Coils Coil 158 178 - -
Arst3g00008 462 SUPERFAMILY E2F-DP heterodimerization region 220 324 IPR037241 -
Arst3g00008 462 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Arst3g00008 462 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Arst3g00008 462 Gene3D - 137 209 IPR036388 -
Arst3g00008 462 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Arst3g00008 462 Gene3D - 215 324 - -
Arst3g00008 462 PANTHER TRANSCRIPTION FACTOR E2F 86 419 IPR015633 GO:0000978|GO:0006357
Arst3g00008 462 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
Arst3g00008 462 FunFam E2F transcription factor 1 136 209 - -
Arst3g00008 462 CDD E2F_DD 218 324 IPR032198 GO:0046983
Arst3g00008 462 MobiDBLite consensus disorder prediction 111 134 - -
Arst3g00008 462 MobiDBLite consensus disorder prediction 88 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00008 Arst-Chr3 72122 77142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00008 19 461 E2F-DP Transcription Factor Family AT5G22220 55.556 2.13e-152 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst3g00008 E2F_CC-MB 8.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00008 K06620 - gmx:100819817 688.337