Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00007 ATGTCGGGCACCAGAGCTCCTCCCGCCGCTGCTAGCCCATCGGAGCAGATCATGCGGCGCCAACTTCCCCTCTCCACCATGAAGCCGCCCTTTGCCGCCTCCGTTGATTACCACCGCTTTGCCCCCGACCACCTCCACCACAATCGCCGAACTGTTGACCACGAACCCGAAGCCATCGTTGTTAAGTCTTCCCAATTGAAGCGGAAGAGTAACACAACAGATTTTGAAGCTGATTCTGGTGATAGGGTGAATCATGTATCCATGGGAGCAGCTAATAATCCTTTTCAGACCCCTAAATCTGGAAAAATAGGGAAGGGTGGCAAATCCTCCAGGCTTACCAAATGCAACAGATCTGGACCTCAAACCCCAGGTCCAAATATTGCAGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGCTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAGAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGGATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAGTTTACAGGCAGAAGTTGAAAACCTTACCATGAAGGAGTGCCGGTTAGATGAACAAATAAGATTGCTTTTCGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTGGAGGTTTCAGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACCATGGGCCCAATAGATGTTTACCTTGTTAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGCAGATGTTGCACCCGAATTTCAACCGACTCCAGAATTTAAAAACCATGAACCAACTGTGGTTGTAGAGGATAACGGGAGAGACATTGCAGTGCAGGGACAAGATGGTCAAATACCTAGTTCTGATTTTACTTCTACACAAGACTTTGTGAGTGGGATCGTGAAAATTGTTCCTTCAGATGTTGATAGCCATGCTGACTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGTGTCCAATGGAATGAACTGGGTACTCTTCAAGATGATTTTTGTACAACTCGCGAGCATGCTATAACTCTAACACATACTTCGAATGTAAATGAAGCATCTACTGCAGCATCAAACCCTGCTGGGGGCTGA 1341 0.4467 MSGTRAPPAAASPSEQIMRRQLPLSTMKPPFAASVDYHRFAPDHLHHNRRTVDHEPEAIVVKSSQLKRKSNTTDFEADSGDRVNHVSMGAANNPFQTPKSGKIGKGGKSSRLTKCNRSGPQTPGPNIAGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSSLQAEVENLTMKECRLDEQIRLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVSDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGADVAPEFQPTPEFKNHEPTVVVEDNGRDIAVQGQDGQIPSSDFTSTQDFVSGIVKIVPSDVDSHADYWLLSDADVSITDMWRTESGVQWNELGTLQDDFCTTREHAITLTHTSNVNEASTAASNPAGG 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00007 446 Pfam E2F transcription factor CC-MB domain 225 307 IPR032198 GO:0046983
Arst3g00007 446 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Arst3g00007 446 Gene3D - 216 308 - -
Arst3g00007 446 Coils Coil 159 179 - -
Arst3g00007 446 FunFam E2F transcription factor 1 137 210 - -
Arst3g00007 446 CDD E2F_DD 219 308 IPR032198 GO:0046983
Arst3g00007 446 PANTHER TRANSCRIPTION FACTOR E2F 86 403 IPR015633 GO:0000978|GO:0006357
Arst3g00007 446 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Arst3g00007 446 SUPERFAMILY E2F-DP heterodimerization region 221 308 IPR037241 -
Arst3g00007 446 Gene3D - 138 210 IPR036388 -
Arst3g00007 446 MobiDBLite consensus disorder prediction 111 134 - -
Arst3g00007 446 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Arst3g00007 446 MobiDBLite consensus disorder prediction 88 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00007 Arst-Chr3 72122 77142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00007 19 445 E2F-DP Transcription Factor Family AT5G22220 53.518 2.00e-139 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst3g00007 E2F_CC-MB 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00007 K06620 - gmx:100819817 647.121