Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00006 ATGTCGGGCACCAGAGCTCCTCCCGCCGCTGCTAGCCCATCGGAGCAGATCATGCGGCGCCAACTTCCCCTCTCCACCATGAAGCCGCCCTTTGCCGCCTCCGTTGATTACCACCGCTTTGCCCCCGACCACCTCCACCACAATCGCCGAACTGTTGACCACGAACCCGAAGCCATCGTTGTTAAGTCTTCCCAATTGAAGCGGAAGAGTAACACAACAGATTTTGAAGCTGATTCTGGTGATAGGGTGAATCATGTATCCATGGGAGCAGCTAATAATCCTTTTCAGACCCCTAAATCTGGAAAAATAGGGAAGGGTGGCAAATCCTCCAGGCTTACCAAATGCAACAGATCTGGACCTCAAACCCCAGGTCCAAATATTGCAGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGCTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAGAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGGATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAGTTTACAGGCAGAAGTTGAAAACCTTACCATGAAGGAGTGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTAAGTGACCTTAGTGAAAATGAAAATAGTGAAAAATTGCTTTTCGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTGGAGGTTTCAGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACCATGGGCCCAATAGATGTTTACCTTGTTAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGCAGATGTTGCACCCGAATTTCAACCGACTCCAGAATTTAAAAACCATGAACCAACTGTGGTTGTAGAGGATAACGGGAGAGACATTGCAGTGCAGGGACAAGATGGTCAAATACCTAGTTCTGATTTTACTTCTACACAAGACTTTGTGAGTGGGATCGTGAAAATTGTTCCTTCAGATGTTGATAGCCATGCTGACTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGTGTCCAATGGAATGAACTGGGTACTCTTCAAGATGATTTTTGTACAACTCGCGAGCATGCTATAACTCTAACACATACTTCGAATGTAAATGAAGCATCTACTGCAGCATCAAACCCTGCTGGGGGCTGA 1392 0.4425 MSGTRAPPAAASPSEQIMRRQLPLSTMKPPFAASVDYHRFAPDHLHHNRRTVDHEPEAIVVKSSQLKRKSNTTDFEADSGDRVNHVSMGAANNPFQTPKSGKIGKGGKSSRLTKCNRSGPQTPGPNIAGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSSLQAEVENLTMKECRLDEQIREMQERLSDLSENENSEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVSDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGADVAPEFQPTPEFKNHEPTVVVEDNGRDIAVQGQDGQIPSSDFTSTQDFVSGIVKIVPSDVDSHADYWLLSDADVSITDMWRTESGVQWNELGTLQDDFCTTREHAITLTHTSNVNEASTAASNPAGG 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00006 463 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Arst3g00006 463 Gene3D - 216 325 - -
Arst3g00006 463 PANTHER TRANSCRIPTION FACTOR E2F 86 420 IPR015633 GO:0000978|GO:0006357
Arst3g00006 463 FunFam E2F transcription factor 1 137 210 - -
Arst3g00006 463 Coils Coil 159 179 - -
Arst3g00006 463 Gene3D - 138 210 IPR036388 -
Arst3g00006 463 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Arst3g00006 463 CDD E2F_DD 219 325 IPR032198 GO:0046983
Arst3g00006 463 SUPERFAMILY E2F-DP heterodimerization region 221 325 IPR037241 -
Arst3g00006 463 MobiDBLite consensus disorder prediction 111 134 - -
Arst3g00006 463 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983
Arst3g00006 463 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Arst3g00006 463 MobiDBLite consensus disorder prediction 88 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00006 Arst-Chr3 72122 77142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00006 19 462 E2F-DP Transcription Factor Family AT5G22220 55.650 2.32e-151 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst3g00006 E2F_CC-MB 8.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00006 K06620 - gmx:100819817 683.715