Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g03663 ATGGCGGCGGCGACGGTGGTTCCGGCGACGACAGTGGTTCCGGCGACGGCGTCGCTCTACGTTGGAGACCTGCACCCTGATGTGGTAGACAGCGAGCTGTTCGAGGCGTTCTCGGAGTTCAAGAGCATCGCCTCCGTTCGAATCTGCAAAGACTCTGCCACAGGGAGGTCACTCTGTTACGGTTACGTCAACTTCATTTCTCACCAAGACGCAAGTCGTGCAATTGAGTTGAAGAATCATTCTTTACTACATGGAAAAGTGATAAGGGTCATGTGGTCTCGTCGCGATCCTGATGTGAGAAAAAGTGGCAGAGGGAATGTTTTTGTTAAGAACTTAGCTGAATCCATAGATAATGCGGGATTACATGATTTATTTCAAAAGTTTGGAAATATCTTGTCCAGCAAAGTTGTGATGTCGGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATGCTGCCATCGAGAAGTTGAATGGCATTACTGTTAAAGATAAGCAGATATATGTTGGGAATTTTGTGAAAAAGAGTGAACGCATACTGCCTGATCCTGAAGCCAAATATACAAATATATACATCAAGAATTTGGACTCAGATATTACGGAAGAACTCCTTCAGAAGAAGTTTTCTTCTTTTGGAAAAATTATGAGCCTGGCTATAGCAAAAGATGCCAATGGGATGTCAAAGGGTTTTGCATTTGTGAACTATGATAACCCAGAGGAAGCTAAACAGGCAATGGAAGCAATGAATGGATCACAATTTGCAGGTTCAAAGATTCTATATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCATCATCTGTTTGAAGAGAAACGTAAGGAACACATCTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTAATGATAGTGTCACTGATGACCAACTACGAGAGCACTTCAGTGCATGTGGCACAATTACATCTGCTAAAGTCATGCAAGATGAGAAAGGTGTAAGCAAGGGGTTTGGCTTTGTCTGCTTCTCTACCCCTGAGGAGGCCCATAAAGCAGTGAACACTTTTCATGGATGCATGTTCCATGGTAAACCACTATATGTTGCTCTTGCCCAGAGGAAAGAGGATAGGCAAACACAGTTGCAGCTCTACTTTTCTCAGCAATTACCAGGGCTAGGTGCACCTTCAAATGCAGTTATTCCTGGTGGATATCCTCGTTTCTACTATACTGGTGGTGTTCTTTCACATGTCCCTTCTCAACCTGGGATGATGTATCAACATCTTGGATCGAGGTCAGGTTGGAGGGCTAATAATGCTTTTGCACCTCCCACTAGATCATTTCAGCAGTCTGCAGCTCCTAACGTTTCAAACAATACTAAGCAGCATAGGCAAAACAGAGGTAGGATGAACGGACACACAAATTCACATGGAAAAGCATACTCTTCTCAGTCAGCAGCCTCTTCTAAAGACTCAAGTGCCCAGCAGTCTGGACAGGCTATTTTTGTTCTCGGTGGACACCGGAATGTGATGGAAAAAGGATCTGGAATTTCATCCTCTGGAGGGTCTCAGGGATCAGAAATGCTGCATAGTATGCTTGCTACTGCTGTCCCCGAGCAACAGAAACAGATACTTGGCGAGCGTCTTTTCCCACTTATCAAGAAACTCAAGCCTAACTTGGCATCAAAGATTACAGGAATGCTTTTGGAGATGGACAATGCAGAATTGCTGCTGCTCCTGGAATCACCGGAATCACTTTCTGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAATTCCACCACCAAGGTTTCTGGCCAGGAAGCATTTCATCCGAACTTGCTTTCGGCCGAAGTTACCGTTAACTGA 1878 0.4457 MAAATVVPATTVVPATASLYVGDLHPDVVDSELFEAFSEFKSIASVRICKDSATGRSLCYGYVNFISHQDASRAIELKNHSLLHGKVIRVMWSRRDPDVRKSGRGNVFVKNLAESIDNAGLHDLFQKFGNILSSKVVMSEDGKSKGYGFVQFESEESANAAIEKLNGITVKDKQIYVGNFVKKSERILPDPEAKYTNIYIKNLDSDITEELLQKKFSSFGKIMSLAIAKDANGMSKGFAFVNYDNPEEAKQAMEAMNGSQFAGSKILYVARAQKKAEREQILHHLFEEKRKEHILKYKGSNIYVKNINDSVTDDQLREHFSACGTITSAKVMQDEKGVSKGFGFVCFSTPEEAHKAVNTFHGCMFHGKPLYVALAQRKEDRQTQLQLYFSQQLPGLGAPSNAVIPGGYPRFYYTGGVLSHVPSQPGMMYQHLGSRSGWRANNAFAPPTRSFQQSAAPNVSNNTKQHRQNRGRMNGHTNSHGKAYSSQSAASSKDSSAQQSGQAIFVLGGHRNVMEKGSGISSSGGSQGSEMLHSMLATAVPEQQKQILGERLFPLIKKLKPNLASKITGMLLEMDNAELLLLLESPESLSAKVEEAVQVLKNSTTKVSGQEAFHPNLLSAEVTVN 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g03663 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 177 IPR000504 GO:0003723
Arst2g03663 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 377 IPR000504 GO:0003723
Arst2g03663 625 FunFam Polyadenylate-binding protein 102 186 - -
Arst2g03663 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 370 IPR000504 GO:0003723
Arst2g03663 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Arst2g03663 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 89 IPR000504 GO:0003723
Arst2g03663 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 266 IPR000504 GO:0003723
Arst2g03663 625 SUPERFAMILY RNA-binding domain, RBD 298 393 IPR035979 GO:0003676
Arst2g03663 625 Gene3D - 289 386 IPR012677 -
Arst2g03663 625 MobiDBLite consensus disorder prediction 440 500 - -
Arst2g03663 625 FunFam Polyadenylate-binding protein 9 101 - -
Arst2g03663 625 Gene3D - 526 616 - -
Arst2g03663 625 SMART rrm2_1 301 373 IPR003954 GO:0003676
Arst2g03663 625 SMART rrm2_1 197 269 IPR003954 GO:0003676
Arst2g03663 625 SMART rrm2_1 18 91 IPR003954 GO:0003676
Arst2g03663 625 SMART rrm2_1 106 178 IPR003954 GO:0003676
Arst2g03663 625 SUPERFAMILY PABC (PABP) domain 532 610 IPR036053 GO:0003723
Arst2g03663 625 CDD RRM2_I_PABPs 103 179 IPR045305 -
Arst2g03663 625 Gene3D - 107 185 IPR012677 -
Arst2g03663 625 Gene3D - 186 288 IPR012677 -
Arst2g03663 625 SMART poly_2 540 603 IPR002004 GO:0003723
Arst2g03663 625 SMART rrm1_1 197 270 IPR000504 GO:0003723
Arst2g03663 625 SMART rrm1_1 106 178 IPR000504 GO:0003723
Arst2g03663 625 SMART rrm1_1 301 373 IPR000504 GO:0003723
Arst2g03663 625 SMART rrm1_1 18 91 IPR000504 GO:0003723
Arst2g03663 625 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 17 601 IPR006515 GO:0003723
Arst2g03663 625 SUPERFAMILY RNA-binding domain, RBD 17 184 IPR035979 GO:0003676
Arst2g03663 625 PANTHER OS02G0815200 PROTEIN 102 275 - -
Arst2g03663 625 SUPERFAMILY RNA-binding domain, RBD 187 280 IPR035979 GO:0003676
Arst2g03663 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Arst2g03663 625 FunFam Polyadenylate-binding protein 283 391 - -
Arst2g03663 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Arst2g03663 625 Gene3D - 9 106 IPR012677 -
Arst2g03663 625 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 528 605 IPR002004 GO:0003723
Arst2g03663 625 FunFam Polyadenylate-binding protein 526 612 - -
Arst2g03663 625 Pfam Poly-adenylate binding protein, unique domain 536 600 IPR002004 GO:0003723
Arst2g03663 625 FunFam Polyadenylate-binding protein 187 282 - -
Arst2g03663 625 CDD RRM4_I_PABPs 299 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g03663 Arst-Chr2 92964551 92969209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g03663 1 622 Eukaryotic Initiation Factors Gene Family AT2G36660 52.698 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g03663 K13126 - gmx:100779547 860.136