Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g03543 ATGTCTATAAACCACTACTCTTCTTCCCCTATGGACCTCCAAGAAACGACACCCTTGTGGTGGACTCAACAACCACAACCTCCTCTCCACTTCAACAATAACATTCATAATTCCCAAAACACCCCTCGCTTCAACCTCAACAACGAAGAAACCGACACCGCCACTACGTCACACGAAGGAGACGAAGAAGAAGAAGAAGAGAATCTTCCAGAACCAATCCAACAAGACGATAACAACCACCAACAACAACAACATAACGAGAGAATGTTCGAGAAGCCGTTAACGCCAAGCGACGTTGGAAAGCTTAACCGTCTCGTCATCCCAAAGCAACACGCCGAGAAGTACTTCCCTCTAACTGCCTCCGCGACTGAGTCAGGCACCGAGTGCAAGGGTTTGTTACTGAGTTTCGAGGACGAGTCAGGAAAGTGTTGGCGATTCCGTTACTCGTATTGGAACAGCAGCCAGAGCTATGTGCTAACCAAAGGATGGAGCCGTTACGTTAAGGACAAGCGTCTCGACGCCGGCGACGTCGTTTCCTTCGAGCGCCACCGCGCTGACTCTCAGAGGCTATTTATTCGCTGGAGGCGCCGATCTTCTCCGGTGGCGCAAGTTAGCAGAGCGCCTCACGCTGATGTGAATAATGACAAGACTGGTGTAGCGTGGACTAGCGGATTCTATTGTGCGCACCCTCCTTATCCTGCGCATCATCTTCATAACCAACACTTAACATATCCACAACAACATGAGGGGAGTAGTAGTAGTCTTCATGCAGTAGGGTCCCAAGGGAAGAACCAAAGGATGAGACCAGTTGGAAACTGTTCAAGTTCAAGTTCGAAGGTACTTAGGTTGTTTGGGGTGAACATGGAATGCCAAACTCAACATGATGATGATTCTCAACCTTCAACAACAAAAGAGGATACTAGTAATTCAGATACCCACCATTTCTACCACCATAATTATTATCATCAACCTTCTAATAATTCTCACCCTAATCACAATCACATGTTACCTCATCAACAATCATACTACTATTAG 1035 0.4696 MSINHYSSSPMDLQETTPLWWTQQPQPPLHFNNNIHNSQNTPRFNLNNEETDTATTSHEGDEEEEEENLPEPIQQDDNNHQQQQHNERMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLTASATESGTECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFERHRADSQRLFIRWRRRSSPVAQVSRAPHADVNNDKTGVAWTSGFYCAHPPYPAHHLHNQHLTYPQQHEGSSSSLHAVGSQGKNQRMRPVGNCSSSSSKVLRLFGVNMECQTQHDDDSQPSTTKEDTSNSDTHHFYHHNYYHQPSNNSHPNHNHMLPHQQSYYY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g03543 344 Pfam B3 DNA binding domain 90 198 IPR003340 GO:0003677
Arst2g03543 344 CDD B3_DNA 88 188 IPR003340 GO:0003677
Arst2g03543 344 MobiDBLite consensus disorder prediction 292 344 - -
Arst2g03543 344 MobiDBLite consensus disorder prediction 22 53 - -
Arst2g03543 344 SUPERFAMILY DNA-binding pseudobarrel domain 85 198 IPR015300 -
Arst2g03543 344 SMART B3_2 90 198 IPR003340 GO:0003677
Arst2g03543 344 MobiDBLite consensus disorder prediction 298 318 - -
Arst2g03543 344 Gene3D - 78 206 IPR015300 -
Arst2g03543 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 303 IPR044800 GO:0003700
Arst2g03543 344 MobiDBLite consensus disorder prediction 244 275 - -
Arst2g03543 344 MobiDBLite consensus disorder prediction 319 344 - -
Arst2g03543 344 MobiDBLite consensus disorder prediction 22 97 - -
Arst2g03543 344 MobiDBLite consensus disorder prediction 56 72 - -
Arst2g03543 344 FunFam B3 domain-containing protein 83 207 - -
Arst2g03543 344 ProSiteProfiles B3 DNA-binding domain profile. 90 198 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g03543 Arst-Chr2 92217934 92220671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g03543 87 305 RAV Transcription Factor Family AT5G06250 50.644 1.83e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst2g03543 B3 3.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g03543 K09287 - gmx:100795470 339.732