LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst2g03541	ATGGGGCGAGTTCGCACAAAAACGGTGAAAAAATCCTCGAGGCAAGTGATCGAGAGGTACTACTCCAAAATGACGCTGGATTTTCACACGAACAAGAAGGTTCTAGAAGAAGTAGCGCTAATCCCATCGAAGAGGCTCCGAAACAAGATCGCAGGGTTCTCAACGCACCTGATGAAGAGGATCCAGAAAGGACCGGTTCGTGGAATCTCGCTGAAGCTGCAGGAAGAGGAGAGAGAGAGGCGCATGGATTTCGTTCCAGAAGTTTCCGCCATTAATGTCGATAGCATCGAGGTCGATAATTCCTGCCATCAGTGTGTTATGTATTGCATTGGGAGAGAATATTACAATGCTGCACTATTGCATATTGGTGATTTTAGTAGCTTTTAG	387	0.4625	MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAINVDSIEVDNSCHQCVMYCIGREYYNAALLHIGDFSSF	128

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst2g03541	128	PANTHER	40S RIBOSOMAL PROTEIN S17	1	103	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Arst2g03541	128	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Arst2g03541	128	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Arst2g03541	128	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Arst2g03541	128	Pfam	Ribosomal S17	1	106	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Arst2g03541	128	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Arst2g03541	128	FunFam	40S ribosomal protein S17	1	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst2g03541	Arst-Chr2	92197059	92197734	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst2g03541	1	102	Cytoplasmic Ribosomal Protein Gene Family	AT3G10610	86.275	5.34e-63	187

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst2g03541	K02962		-	rcu:8271121	186.808